Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2747

Experiment: A22 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2746 and Shewana3_2747 are separated by 230 nucleotidesShewana3_2747 and Shewana3_2748 are separated by 238 nucleotides Shewana3_2746: Shewana3_2746 - hypothetical protein (RefSeq), at 3,277,084 to 3,277,914 _2746 Shewana3_2747: Shewana3_2747 - acetyl-CoA hydrolase/transferase (RefSeq), at 3,278,145 to 3,279,431 _2747 Shewana3_2748: Shewana3_2748 - ABC-2 type transporter (RefSeq), at 3,279,670 to 3,280,791 _2748 Position (kb) 3278 3279 3280Strain fitness (log2 ratio) -1 0 1 2at 3277.376 kb on + strand, within Shewana3_2746at 3277.376 kb on + strand, within Shewana3_2746at 3277.405 kb on - strand, within Shewana3_2746at 3277.512 kb on - strand, within Shewana3_2746at 3277.621 kb on - strand, within Shewana3_2746at 3277.904 kb on - strandat 3277.904 kb on - strandat 3278.098 kb on - strandat 3278.129 kb on - strandat 3278.165 kb on + strandat 3278.212 kb on + strandat 3278.323 kb on - strand, within Shewana3_2747at 3278.382 kb on + strand, within Shewana3_2747at 3278.414 kb on - strand, within Shewana3_2747at 3278.492 kb on - strand, within Shewana3_2747at 3278.745 kb on + strand, within Shewana3_2747at 3278.886 kb on + strand, within Shewana3_2747at 3278.975 kb on - strand, within Shewana3_2747at 3279.245 kb on + strand, within Shewana3_2747at 3279.409 kb on + strandat 3279.552 kb on - strandat 3279.711 kb on + strandat 3279.793 kb on + strand, within Shewana3_2748at 3279.903 kb on + strand, within Shewana3_2748at 3280.119 kb on + strand, within Shewana3_2748at 3280.119 kb on + strand, within Shewana3_2748at 3280.127 kb on - strand, within Shewana3_2748at 3280.127 kb on - strand, within Shewana3_2748at 3280.150 kb on - strand, within Shewana3_2748at 3280.181 kb on - strand, within Shewana3_2748at 3280.224 kb on - strand, within Shewana3_2748at 3280.272 kb on + strand, within Shewana3_2748at 3280.304 kb on - strand, within Shewana3_2748at 3280.368 kb on + strand, within Shewana3_2748

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.05 mg/ml
remove
3,277,376 + Shewana3_2746 0.35 +0.2
3,277,376 + Shewana3_2746 0.35 -0.3
3,277,405 - Shewana3_2746 0.39 -0.3
3,277,512 - Shewana3_2746 0.52 -0.9
3,277,621 - Shewana3_2746 0.65 +0.0
3,277,904 - +1.8
3,277,904 - -0.2
3,278,098 - +1.2
3,278,129 - -1.6
3,278,165 + -0.3
3,278,212 + -0.9
3,278,323 - Shewana3_2747 0.14 -0.1
3,278,382 + Shewana3_2747 0.18 +1.2
3,278,414 - Shewana3_2747 0.21 -0.1
3,278,492 - Shewana3_2747 0.27 -0.5
3,278,745 + Shewana3_2747 0.47 +2.2
3,278,886 + Shewana3_2747 0.58 -0.3
3,278,975 - Shewana3_2747 0.64 -0.7
3,279,245 + Shewana3_2747 0.85 +0.4
3,279,409 + +1.2
3,279,552 - +1.2
3,279,711 + +1.2
3,279,793 + Shewana3_2748 0.11 -1.1
3,279,903 + Shewana3_2748 0.21 -0.4
3,280,119 + Shewana3_2748 0.40 -1.1
3,280,119 + Shewana3_2748 0.40 +0.7
3,280,127 - Shewana3_2748 0.41 -0.3
3,280,127 - Shewana3_2748 0.41 +1.7
3,280,150 - Shewana3_2748 0.43 -0.0
3,280,181 - Shewana3_2748 0.46 +0.2
3,280,224 - Shewana3_2748 0.49 +0.2
3,280,272 + Shewana3_2748 0.54 -0.8
3,280,304 - Shewana3_2748 0.57 +2.2
3,280,368 + Shewana3_2748 0.62 +1.2

Or see this region's nucleotide sequence