Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2745 and Shewana3_2746 are separated by 69 nucleotides Shewana3_2746 and Shewana3_2747 are separated by 230 nucleotides
Shewana3_2745: Shewana3_2745 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,275,449 to 3,277,014
_2745
Shewana3_2746: Shewana3_2746 - hypothetical protein (RefSeq), at 3,277,084 to 3,277,914
_2746
Shewana3_2747: Shewana3_2747 - acetyl-CoA hydrolase/transferase (RefSeq), at 3,278,145 to 3,279,431
_2747
Position (kb)
3277
3278 Strain fitness (log2 ratio)
-1
0
1
2 at 3276.219 kb on - strand, within Shewana3_2745 at 3276.374 kb on + strand, within Shewana3_2745 at 3276.382 kb on - strand, within Shewana3_2745 at 3276.629 kb on + strand, within Shewana3_2745 at 3276.999 kb on - strand at 3276.999 kb on - strand at 3277.108 kb on + strand at 3277.138 kb on + strand at 3277.138 kb on + strand at 3277.376 kb on + strand, within Shewana3_2746 at 3277.376 kb on + strand, within Shewana3_2746 at 3277.405 kb on - strand, within Shewana3_2746 at 3277.512 kb on - strand, within Shewana3_2746 at 3277.621 kb on - strand, within Shewana3_2746 at 3277.904 kb on - strand at 3277.904 kb on - strand at 3278.098 kb on - strand at 3278.129 kb on - strand at 3278.165 kb on + strand at 3278.212 kb on + strand at 3278.323 kb on - strand, within Shewana3_2747 at 3278.382 kb on + strand, within Shewana3_2747 at 3278.414 kb on - strand, within Shewana3_2747 at 3278.492 kb on - strand, within Shewana3_2747 at 3278.745 kb on + strand, within Shewana3_2747 at 3278.886 kb on + strand, within Shewana3_2747
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 3,276,219 - Shewana3_2745 0.49 +1.2 3,276,374 + Shewana3_2745 0.59 -0.0 3,276,382 - Shewana3_2745 0.60 +0.7 3,276,629 + Shewana3_2745 0.75 -0.6 3,276,999 - -0.3 3,276,999 - +0.1 3,277,108 + +0.2 3,277,138 + -0.8 3,277,138 + +1.2 3,277,376 + Shewana3_2746 0.35 +0.2 3,277,376 + Shewana3_2746 0.35 -0.3 3,277,405 - Shewana3_2746 0.39 -0.3 3,277,512 - Shewana3_2746 0.52 -0.9 3,277,621 - Shewana3_2746 0.65 +0.0 3,277,904 - +1.8 3,277,904 - -0.2 3,278,098 - +1.2 3,278,129 - -1.6 3,278,165 + -0.3 3,278,212 + -0.9 3,278,323 - Shewana3_2747 0.14 -0.1 3,278,382 + Shewana3_2747 0.18 +1.2 3,278,414 - Shewana3_2747 0.21 -0.1 3,278,492 - Shewana3_2747 0.27 -0.5 3,278,745 + Shewana3_2747 0.47 +2.2 3,278,886 + Shewana3_2747 0.58 -0.3
Or see this region's nucleotide sequence