Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2736 and Shewana3_2737 are separated by 95 nucleotides Shewana3_2737 and Shewana3_2738 are separated by 245 nucleotides
Shewana3_2736: Shewana3_2736 - hypothetical protein (RefSeq), at 3,267,578 to 3,268,465
_2736
Shewana3_2737: Shewana3_2737 - putative esterase (RefSeq), at 3,268,561 to 3,269,721
_2737
Shewana3_2738: Shewana3_2738 - hypothetical protein (RefSeq), at 3,269,967 to 3,270,791
_2738
Position (kb)
3268
3269
3270 Strain fitness (log2 ratio)
-1
0
1
2 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.687 kb on - strand, within Shewana3_2736 at 3267.687 kb on - strand, within Shewana3_2736 at 3267.795 kb on + strand, within Shewana3_2736 at 3267.803 kb on - strand, within Shewana3_2736 at 3267.828 kb on - strand, within Shewana3_2736 at 3268.048 kb on + strand, within Shewana3_2736 at 3268.163 kb on - strand, within Shewana3_2736 at 3268.194 kb on + strand, within Shewana3_2736 at 3268.194 kb on + strand, within Shewana3_2736 at 3268.271 kb on + strand, within Shewana3_2736 at 3268.279 kb on - strand, within Shewana3_2736 at 3268.561 kb on + strand at 3268.814 kb on + strand, within Shewana3_2737 at 3268.889 kb on - strand, within Shewana3_2737 at 3269.291 kb on + strand, within Shewana3_2737 at 3269.291 kb on + strand, within Shewana3_2737 at 3269.398 kb on + strand, within Shewana3_2737 at 3269.415 kb on + strand, within Shewana3_2737 at 3269.423 kb on - strand, within Shewana3_2737 at 3269.423 kb on - strand, within Shewana3_2737 at 3269.430 kb on + strand, within Shewana3_2737 at 3269.478 kb on + strand, within Shewana3_2737 at 3269.538 kb on + strand, within Shewana3_2737 at 3269.721 kb on + strand at 3269.875 kb on + strand at 3270.247 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.372 kb on + strand, within Shewana3_2738 at 3270.380 kb on - strand, within Shewana3_2738 at 3270.380 kb on - strand, within Shewana3_2738 at 3270.380 kb on - strand, within Shewana3_2738 at 3270.480 kb on - strand, within Shewana3_2738 at 3270.527 kb on - strand, within Shewana3_2738
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 3,267,679 + Shewana3_2736 0.11 +1.3 3,267,679 + Shewana3_2736 0.11 +1.3 3,267,679 + Shewana3_2736 0.11 +1.3 3,267,687 - Shewana3_2736 0.12 +0.2 3,267,687 - Shewana3_2736 0.12 -0.7 3,267,795 + Shewana3_2736 0.24 +1.3 3,267,803 - Shewana3_2736 0.25 +0.2 3,267,828 - Shewana3_2736 0.28 -0.1 3,268,048 + Shewana3_2736 0.53 +0.3 3,268,163 - Shewana3_2736 0.66 +0.3 3,268,194 + Shewana3_2736 0.69 -1.1 3,268,194 + Shewana3_2736 0.69 +0.3 3,268,271 + Shewana3_2736 0.78 -0.4 3,268,279 - Shewana3_2736 0.79 -0.5 3,268,561 + +0.5 3,268,814 + Shewana3_2737 0.22 +0.4 3,268,889 - Shewana3_2737 0.28 +0.2 3,269,291 + Shewana3_2737 0.63 +0.0 3,269,291 + Shewana3_2737 0.63 -0.8 3,269,398 + Shewana3_2737 0.72 +2.2 3,269,415 + Shewana3_2737 0.74 +0.7 3,269,423 - Shewana3_2737 0.74 +1.2 3,269,423 - Shewana3_2737 0.74 +1.2 3,269,430 + Shewana3_2737 0.75 -0.6 3,269,478 + Shewana3_2737 0.79 +0.7 3,269,538 + Shewana3_2737 0.84 +0.2 3,269,721 + -0.3 3,269,875 + -1.1 3,270,247 + Shewana3_2738 0.34 +1.2 3,270,372 + Shewana3_2738 0.49 +1.2 3,270,372 + Shewana3_2738 0.49 +0.2 3,270,372 + Shewana3_2738 0.49 +0.2 3,270,372 + Shewana3_2738 0.49 +1.2 3,270,372 + Shewana3_2738 0.49 +0.2 3,270,380 - Shewana3_2738 0.50 -1.0 3,270,380 - Shewana3_2738 0.50 +0.2 3,270,380 - Shewana3_2738 0.50 +1.2 3,270,480 - Shewana3_2738 0.62 +1.2 3,270,527 - Shewana3_2738 0.68 +1.2
Or see this region's nucleotide sequence