Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2345

Experiment: A22 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2344 and Shewana3_2345 are separated by 120 nucleotidesShewana3_2345 and Shewana3_2346 are separated by 113 nucleotides Shewana3_2344: Shewana3_2344 - arsenical pump membrane protein (RefSeq), at 2,820,383 to 2,821,666 _2344 Shewana3_2345: Shewana3_2345 - arsenate reductase (RefSeq), at 2,821,787 to 2,822,263 _2345 Shewana3_2346: Shewana3_2346 - acriflavin resistance protein (RefSeq), at 2,822,377 to 2,825,451 _2346 Position (kb) 2821 2822 2823Strain fitness (log2 ratio) -1 0 1at 2820.788 kb on + strand, within Shewana3_2344at 2820.788 kb on + strand, within Shewana3_2344at 2820.788 kb on + strand, within Shewana3_2344at 2820.857 kb on - strand, within Shewana3_2344at 2821.076 kb on + strand, within Shewana3_2344at 2821.233 kb on + strand, within Shewana3_2344at 2821.278 kb on - strand, within Shewana3_2344at 2821.312 kb on - strand, within Shewana3_2344at 2821.329 kb on + strand, within Shewana3_2344at 2821.465 kb on + strand, within Shewana3_2344at 2821.640 kb on - strandat 2821.812 kb on - strandat 2821.850 kb on - strand, within Shewana3_2345at 2821.869 kb on + strand, within Shewana3_2345at 2822.036 kb on + strand, within Shewana3_2345at 2822.140 kb on - strand, within Shewana3_2345at 2822.327 kb on - strandat 2822.527 kb on + strandat 2822.549 kb on - strandat 2822.601 kb on - strandat 2822.693 kb on - strand, within Shewana3_2346at 2822.866 kb on + strand, within Shewana3_2346at 2822.874 kb on - strand, within Shewana3_2346at 2823.096 kb on - strand, within Shewana3_2346

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.05 mg/ml
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2,820,788 + Shewana3_2344 0.32 +1.3
2,820,788 + Shewana3_2344 0.32 +1.1
2,820,788 + Shewana3_2344 0.32 +1.3
2,820,857 - Shewana3_2344 0.37 -0.3
2,821,076 + Shewana3_2344 0.54 +0.2
2,821,233 + Shewana3_2344 0.66 +1.6
2,821,278 - Shewana3_2344 0.70 -0.3
2,821,312 - Shewana3_2344 0.72 +1.3
2,821,329 + Shewana3_2344 0.74 +0.1
2,821,465 + Shewana3_2344 0.84 -0.8
2,821,640 - +1.3
2,821,812 - +0.9
2,821,850 - Shewana3_2345 0.13 -1.0
2,821,869 + Shewana3_2345 0.17 -1.7
2,822,036 + Shewana3_2345 0.52 +0.8
2,822,140 - Shewana3_2345 0.74 +1.3
2,822,327 - +0.3
2,822,527 + +1.3
2,822,549 - +1.3
2,822,601 - +1.3
2,822,693 - Shewana3_2346 0.10 -0.7
2,822,866 + Shewana3_2346 0.16 +1.3
2,822,874 - Shewana3_2346 0.16 +0.0
2,823,096 - Shewana3_2346 0.23 +1.3

Or see this region's nucleotide sequence