Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2345
Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,820,788 | + | Shewana3_2344 | 0.32 | +1.3 | |
2,820,788 | + | Shewana3_2344 | 0.32 | +1.1 | |
2,820,788 | + | Shewana3_2344 | 0.32 | +1.3 | |
2,820,857 | - | Shewana3_2344 | 0.37 | -0.3 | |
2,821,076 | + | Shewana3_2344 | 0.54 | +0.2 | |
2,821,233 | + | Shewana3_2344 | 0.66 | +1.6 | |
2,821,278 | - | Shewana3_2344 | 0.70 | -0.3 | |
2,821,312 | - | Shewana3_2344 | 0.72 | +1.3 | |
2,821,329 | + | Shewana3_2344 | 0.74 | +0.1 | |
2,821,465 | + | Shewana3_2344 | 0.84 | -0.8 | |
2,821,640 | - | +1.3 | |||
2,821,812 | - | +0.9 | |||
2,821,850 | - | Shewana3_2345 | 0.13 | -1.0 | |
2,821,869 | + | Shewana3_2345 | 0.17 | -1.7 | |
2,822,036 | + | Shewana3_2345 | 0.52 | +0.8 | |
2,822,140 | - | Shewana3_2345 | 0.74 | +1.3 | |
2,822,327 | - | +0.3 | |||
2,822,527 | + | +1.3 | |||
2,822,549 | - | +1.3 | |||
2,822,601 | - | +1.3 | |||
2,822,693 | - | Shewana3_2346 | 0.10 | -0.7 | |
2,822,866 | + | Shewana3_2346 | 0.16 | +1.3 | |
2,822,874 | - | Shewana3_2346 | 0.16 | +0.0 | |
2,823,096 | - | Shewana3_2346 | 0.23 | +1.3 |
Or see this region's nucleotide sequence