Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2272 and Shewana3_2273 are separated by 584 nucleotides Shewana3_2273 and Shewana3_2274 are separated by 68 nucleotides Shewana3_2274 and Shewana3_2275 are separated by 155 nucleotides Shewana3_2275 and hscA are separated by 8 nucleotides
Shewana3_2272: Shewana3_2272 - nucleoside diphosphate kinase (RefSeq), at 2,736,146 to 2,736,577
_2272
Shewana3_2273: Shewana3_2273 - hypothetical protein (RefSeq), at 2,737,162 to 2,737,359
_2273
Shewana3_2274: Shewana3_2274 - SSU ribosomal protein S6P modification protein (RefSeq), at 2,737,428 to 2,738,327
_2274
Shewana3_2275: Shewana3_2275 - ferredoxin, 2Fe-2S type, ISC system (RefSeq), at 2,738,483 to 2,738,818
_2275
Shewana3_2276: hscA - chaperone protein HscA (RefSeq), at 2,738,827 to 2,740,689
hscA
Position (kb)
2737
2738
2739 Strain fitness (log2 ratio)
-2
-1
0
1 at 2736.908 kb on + strand at 2737.404 kb on + strand at 2737.691 kb on - strand, within Shewana3_2274 at 2737.691 kb on - strand, within Shewana3_2274 at 2737.789 kb on + strand, within Shewana3_2274 at 2738.099 kb on + strand, within Shewana3_2274 at 2738.099 kb on + strand, within Shewana3_2274 at 2738.294 kb on + strand at 2738.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 2,736,908 + +1.4 2,737,404 + +1.4 2,737,691 - Shewana3_2274 0.29 -0.4 2,737,691 - Shewana3_2274 0.29 -2.2 2,737,789 + Shewana3_2274 0.40 +1.4 2,738,099 + Shewana3_2274 0.75 +1.4 2,738,099 + Shewana3_2274 0.75 +1.4 2,738,294 + +1.4 2,738,302 - +1.4
Or see this region's nucleotide sequence