Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2249

Experiment: A22 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2247 and Shewana3_2248 are separated by 67 nucleotidesShewana3_2248 and Shewana3_2249 are separated by 80 nucleotidesShewana3_2249 and Shewana3_2250 are separated by 533 nucleotides Shewana3_2247: Shewana3_2247 - exodeoxyribonuclease V, alpha subunit (RefSeq), at 2,707,752 to 2,709,857 _2247 Shewana3_2248: Shewana3_2248 - hypothetical protein (RefSeq), at 2,709,925 to 2,710,320 _2248 Shewana3_2249: Shewana3_2249 - methyltransferase type 12 (RefSeq), at 2,710,401 to 2,711,054 _2249 Shewana3_2250: Shewana3_2250 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,711,588 to 2,712,895 _2250 Position (kb) 2710 2711 2712Strain fitness (log2 ratio) -1 0 1 2 3at 2709.987 kb on + strand, within Shewana3_2248at 2709.995 kb on - strand, within Shewana3_2248at 2710.137 kb on + strand, within Shewana3_2248at 2710.348 kb on + strandat 2710.348 kb on + strandat 2710.348 kb on + strandat 2710.356 kb on - strandat 2710.356 kb on - strandat 2710.356 kb on - strandat 2710.518 kb on + strand, within Shewana3_2249at 2710.582 kb on + strand, within Shewana3_2249at 2710.777 kb on - strand, within Shewana3_2249at 2710.837 kb on + strand, within Shewana3_2249at 2710.863 kb on + strand, within Shewana3_2249at 2711.063 kb on + strandat 2711.063 kb on + strandat 2711.063 kb on + strandat 2711.063 kb on + strandat 2711.200 kb on + strandat 2711.609 kb on - strandat 2711.652 kb on - strandat 2711.689 kb on + strandat 2711.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.05 mg/ml
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2,709,987 + Shewana3_2248 0.16 +1.4
2,709,995 - Shewana3_2248 0.18 +1.4
2,710,137 + Shewana3_2248 0.54 +1.4
2,710,348 + +3.4
2,710,348 + +0.4
2,710,348 + +1.4
2,710,356 - +0.4
2,710,356 - +2.0
2,710,356 - +0.5
2,710,518 + Shewana3_2249 0.18 -0.9
2,710,582 + Shewana3_2249 0.28 +1.4
2,710,777 - Shewana3_2249 0.57 -0.2
2,710,837 + Shewana3_2249 0.67 +1.4
2,710,863 + Shewana3_2249 0.71 +1.4
2,711,063 + +1.4
2,711,063 + +1.4
2,711,063 + +1.4
2,711,063 + +1.4
2,711,200 + +1.4
2,711,609 - +2.4
2,711,652 - +1.4
2,711,689 + +2.4
2,711,689 + +0.4

Or see this region's nucleotide sequence