Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1784
Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,101,787 | + | +1.3 | |||
2,102,092 | - | Shewana3_1783 | 0.38 | +1.3 | |
2,102,140 | - | Shewana3_1783 | 0.43 | -0.7 | |
2,102,375 | - | Shewana3_1783 | 0.66 | +1.3 | |
2,102,398 | + | Shewana3_1783 | 0.68 | +1.3 | |
2,102,542 | + | Shewana3_1783 | 0.82 | -0.2 | |
2,102,700 | - | +1.3 | |||
2,102,700 | - | +0.3 | |||
2,102,700 | - | +1.9 | |||
2,102,922 | - | +1.3 | |||
2,103,076 | - | Shewana3_1784 | 0.14 | +1.3 | |
2,103,151 | - | Shewana3_1784 | 0.17 | +1.3 | |
2,103,178 | + | Shewana3_1784 | 0.18 | +0.3 | |
2,103,178 | + | Shewana3_1784 | 0.18 | -0.0 | |
2,103,362 | - | Shewana3_1784 | 0.26 | +1.3 | |
2,103,505 | - | Shewana3_1784 | 0.33 | +1.3 | |
2,103,780 | + | Shewana3_1784 | 0.44 | +0.8 | |
2,103,865 | - | Shewana3_1784 | 0.48 | +0.3 | |
2,103,904 | + | Shewana3_1784 | 0.50 | +0.5 | |
2,104,188 | + | Shewana3_1784 | 0.62 | -0.3 | |
2,104,196 | - | Shewana3_1784 | 0.62 | +2.9 | |
2,104,196 | - | Shewana3_1784 | 0.62 | -0.2 | |
2,104,352 | - | Shewana3_1784 | 0.69 | -2.0 | |
2,104,415 | + | Shewana3_1784 | 0.72 | -0.1 | |
2,104,751 | + | Shewana3_1784 | 0.86 | -0.7 | |
2,104,801 | + | Shewana3_1784 | 0.88 | +0.3 | |
2,104,804 | - | Shewana3_1784 | 0.89 | +1.3 | |
2,104,858 | + | +0.5 |
Or see this region's nucleotide sequence