Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1624 and Shewana3_1625 are separated by 295 nucleotides Shewana3_1625 and Shewana3_1626 are separated by 227 nucleotides Shewana3_1626 and Shewana3_1627 are separated by 18 nucleotides
Shewana3_1624: Shewana3_1624 - arginine decarboxylase (RefSeq), at 1,911,885 to 1,913,798
_1624
Shewana3_1625: Shewana3_1625 - S-adenosylmethionine decarboxylase (RefSeq), at 1,914,094 to 1,915,029
_1625
Shewana3_1626: Shewana3_1626 - pyridoxamine 5'-phosphate oxidase (RefSeq), at 1,915,257 to 1,915,895
_1626
Shewana3_1627: Shewana3_1627 - hypothetical protein (RefSeq), at 1,915,914 to 1,916,366
_1627
Position (kb)
1914
1915
1916 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1913.541 kb on + strand, within Shewana3_1624 at 1913.894 kb on - strand at 1914.012 kb on + strand at 1914.371 kb on - strand, within Shewana3_1625 at 1914.473 kb on - strand, within Shewana3_1625 at 1914.884 kb on + strand, within Shewana3_1625 at 1914.892 kb on - strand, within Shewana3_1625 at 1914.922 kb on - strand, within Shewana3_1625 at 1914.939 kb on + strand at 1914.982 kb on - strand at 1914.982 kb on - strand at 1915.904 kb on + strand at 1915.920 kb on - strand at 1915.922 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 1,913,541 + Shewana3_1624 0.87 -0.1 1,913,894 - +0.2 1,914,012 + -0.7 1,914,371 - Shewana3_1625 0.30 +0.3 1,914,473 - Shewana3_1625 0.40 -0.7 1,914,884 + Shewana3_1625 0.84 -0.9 1,914,892 - Shewana3_1625 0.85 +2.3 1,914,922 - Shewana3_1625 0.88 +1.3 1,914,939 + -1.1 1,914,982 - +1.3 1,914,982 - +2.9 1,915,904 + -1.9 1,915,920 - +1.3 1,915,922 + +0.3
Or see this region's nucleotide sequence