Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1572 and Shewana3_1573 are separated by 100 nucleotides Shewana3_1573 and Shewana3_1574 are separated by 712 nucleotides Shewana3_1574 and Shewana3_1575 are separated by 11 nucleotides
Shewana3_1572: Shewana3_1572 - NAD-dependent epimerase/dehydratase (RefSeq), at 1,840,055 to 1,840,912
_1572
Shewana3_1573: Shewana3_1573 - DSBA oxidoreductase (RefSeq), at 1,841,013 to 1,841,666
_1573
Shewana3_1574: Shewana3_1574 - hypothetical protein (RefSeq), at 1,842,379 to 1,842,645
_1574
Shewana3_1575: Shewana3_1575 - Na+/solute symporter (RefSeq), at 1,842,657 to 1,844,393
_1575
Position (kb)
1841
1842 Strain fitness (log2 ratio)
-1
0
1
2 at 1840.380 kb on + strand, within Shewana3_1572 at 1840.426 kb on + strand, within Shewana3_1572 at 1840.697 kb on + strand, within Shewana3_1572 at 1841.193 kb on - strand, within Shewana3_1573 at 1841.605 kb on + strand at 1841.613 kb on - strand at 1841.620 kb on + strand at 1841.682 kb on + strand at 1841.682 kb on + strand at 1841.682 kb on + strand at 1841.690 kb on - strand at 1841.690 kb on - strand at 1841.690 kb on - strand at 1841.690 kb on - strand at 1842.196 kb on - strand at 1842.329 kb on - strand at 1842.363 kb on + strand at 1842.402 kb on + strand at 1842.639 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 1,840,380 + Shewana3_1572 0.38 -0.6 1,840,426 + Shewana3_1572 0.43 -1.3 1,840,697 + Shewana3_1572 0.75 +0.5 1,841,193 - Shewana3_1573 0.28 +1.3 1,841,605 + +1.3 1,841,613 - +2.3 1,841,620 + +0.3 1,841,682 + -0.5 1,841,682 + +1.3 1,841,682 + -0.9 1,841,690 - +1.3 1,841,690 - +2.3 1,841,690 - +1.3 1,841,690 - +1.3 1,842,196 - +0.3 1,842,329 - +1.3 1,842,363 + -1.5 1,842,402 + -1.0 1,842,639 + -0.3
Or see this region's nucleotide sequence