Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1493

Experiment: A22 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1492 and Shewana3_1493 are separated by 179 nucleotidesShewana3_1493 and Shewana3_1494 are separated by 225 nucleotides Shewana3_1492: Shewana3_1492 - prolyl aminopeptidase 2 (RefSeq), at 1,739,069 to 1,740,358 _1492 Shewana3_1493: Shewana3_1493 - beta-lactamase domain-containing protein (RefSeq), at 1,740,538 to 1,741,182 _1493 Shewana3_1494: Shewana3_1494 - hypothetical protein (RefSeq), at 1,741,408 to 1,742,421 _1494 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -3 -2 -1 0 1at 1739.808 kb on + strand, within Shewana3_1492at 1740.040 kb on + strand, within Shewana3_1492at 1740.088 kb on + strand, within Shewana3_1492at 1740.088 kb on + strand, within Shewana3_1492at 1740.125 kb on + strand, within Shewana3_1492at 1740.240 kb on + strandat 1740.248 kb on - strandat 1740.374 kb on - strandat 1740.918 kb on + strand, within Shewana3_1493at 1740.923 kb on + strand, within Shewana3_1493at 1740.923 kb on + strand, within Shewana3_1493at 1741.064 kb on + strand, within Shewana3_1493at 1741.399 kb on + strandat 1741.401 kb on + strandat 1741.488 kb on + strandat 1741.588 kb on + strand, within Shewana3_1494at 1741.679 kb on - strand, within Shewana3_1494at 1741.736 kb on + strand, within Shewana3_1494at 1741.842 kb on + strand, within Shewana3_1494at 1742.096 kb on + strand, within Shewana3_1494at 1742.096 kb on + strand, within Shewana3_1494at 1742.178 kb on + strand, within Shewana3_1494

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.05 mg/ml
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1,739,808 + Shewana3_1492 0.57 -0.2
1,740,040 + Shewana3_1492 0.75 -1.3
1,740,088 + Shewana3_1492 0.79 +0.3
1,740,088 + Shewana3_1492 0.79 +1.6
1,740,125 + Shewana3_1492 0.82 +1.3
1,740,240 + +0.3
1,740,248 - +1.3
1,740,374 - -0.4
1,740,918 + Shewana3_1493 0.59 +0.1
1,740,923 + Shewana3_1493 0.60 +0.2
1,740,923 + Shewana3_1493 0.60 +0.2
1,741,064 + Shewana3_1493 0.82 +0.0
1,741,399 + -0.8
1,741,401 + -3.4
1,741,488 + -0.5
1,741,588 + Shewana3_1494 0.18 -1.7
1,741,679 - Shewana3_1494 0.27 +0.7
1,741,736 + Shewana3_1494 0.32 -0.3
1,741,842 + Shewana3_1494 0.43 -0.3
1,742,096 + Shewana3_1494 0.68 -2.4
1,742,096 + Shewana3_1494 0.68 -0.5
1,742,178 + Shewana3_1494 0.76 +0.4

Or see this region's nucleotide sequence