Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1493
Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,739,808 | + | Shewana3_1492 | 0.57 | -0.2 | |
1,740,040 | + | Shewana3_1492 | 0.75 | -1.3 | |
1,740,088 | + | Shewana3_1492 | 0.79 | +0.3 | |
1,740,088 | + | Shewana3_1492 | 0.79 | +1.6 | |
1,740,125 | + | Shewana3_1492 | 0.82 | +1.3 | |
1,740,240 | + | +0.3 | |||
1,740,248 | - | +1.3 | |||
1,740,374 | - | -0.4 | |||
1,740,918 | + | Shewana3_1493 | 0.59 | +0.1 | |
1,740,923 | + | Shewana3_1493 | 0.60 | +0.2 | |
1,740,923 | + | Shewana3_1493 | 0.60 | +0.2 | |
1,741,064 | + | Shewana3_1493 | 0.82 | +0.0 | |
1,741,399 | + | -0.8 | |||
1,741,401 | + | -3.4 | |||
1,741,488 | + | -0.5 | |||
1,741,588 | + | Shewana3_1494 | 0.18 | -1.7 | |
1,741,679 | - | Shewana3_1494 | 0.27 | +0.7 | |
1,741,736 | + | Shewana3_1494 | 0.32 | -0.3 | |
1,741,842 | + | Shewana3_1494 | 0.43 | -0.3 | |
1,742,096 | + | Shewana3_1494 | 0.68 | -2.4 | |
1,742,096 | + | Shewana3_1494 | 0.68 | -0.5 | |
1,742,178 | + | Shewana3_1494 | 0.76 | +0.4 |
Or see this region's nucleotide sequence