Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1081 and Shewana3_1082 are separated by 143 nucleotides Shewana3_1082 and Shewana3_1083 are separated by 75 nucleotides
Shewana3_1081: Shewana3_1081 - AraC family transcriptional regulator (RefSeq), at 1,268,883 to 1,269,650
_1081
Shewana3_1082: Shewana3_1082 - major facilitator transporter (RefSeq), at 1,269,794 to 1,270,972
_1082
Shewana3_1083: Shewana3_1083 - acriflavin resistance protein (RefSeq), at 1,271,048 to 1,274,203
_1083
Position (kb)
1269
1270
1271 Strain fitness (log2 ratio)
-2
-1
0
1 at 1269.206 kb on - strand, within Shewana3_1081 at 1269.256 kb on - strand, within Shewana3_1081 at 1269.278 kb on - strand, within Shewana3_1081 at 1269.404 kb on + strand, within Shewana3_1081 at 1269.549 kb on + strand, within Shewana3_1081 at 1269.708 kb on + strand at 1269.708 kb on + strand at 1269.708 kb on + strand at 1270.035 kb on - strand, within Shewana3_1082 at 1270.078 kb on + strand, within Shewana3_1082 at 1270.115 kb on + strand, within Shewana3_1082 at 1270.231 kb on + strand, within Shewana3_1082 at 1270.246 kb on + strand, within Shewana3_1082 at 1270.253 kb on + strand, within Shewana3_1082 at 1270.597 kb on - strand, within Shewana3_1082 at 1270.650 kb on + strand, within Shewana3_1082 at 1270.835 kb on + strand, within Shewana3_1082 at 1270.855 kb on + strand at 1270.908 kb on - strand at 1270.913 kb on - strand at 1271.025 kb on - strand at 1271.187 kb on - strand at 1271.203 kb on - strand at 1271.256 kb on - strand at 1271.508 kb on - strand, within Shewana3_1083 at 1271.638 kb on + strand, within Shewana3_1083 at 1271.760 kb on + strand, within Shewana3_1083 at 1271.768 kb on - strand, within Shewana3_1083 at 1271.790 kb on - strand, within Shewana3_1083 at 1271.851 kb on + strand, within Shewana3_1083 at 1271.860 kb on - strand, within Shewana3_1083 at 1271.874 kb on + strand, within Shewana3_1083
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 1,269,206 - Shewana3_1081 0.42 +0.8 1,269,256 - Shewana3_1081 0.49 +1.3 1,269,278 - Shewana3_1081 0.51 +1.4 1,269,404 + Shewana3_1081 0.68 -1.2 1,269,549 + Shewana3_1081 0.87 -0.7 1,269,708 + +0.9 1,269,708 + -0.7 1,269,708 + -0.5 1,270,035 - Shewana3_1082 0.20 -1.4 1,270,078 + Shewana3_1082 0.24 -1.0 1,270,115 + Shewana3_1082 0.27 -0.4 1,270,231 + Shewana3_1082 0.37 -1.4 1,270,246 + Shewana3_1082 0.38 +0.1 1,270,253 + Shewana3_1082 0.39 -0.2 1,270,597 - Shewana3_1082 0.68 +0.3 1,270,650 + Shewana3_1082 0.73 +0.9 1,270,835 + Shewana3_1082 0.88 +0.1 1,270,855 + -0.3 1,270,908 - +1.4 1,270,913 - +1.4 1,271,025 - -0.6 1,271,187 - -0.5 1,271,203 - +1.1 1,271,256 - -0.2 1,271,508 - Shewana3_1083 0.15 +0.4 1,271,638 + Shewana3_1083 0.19 +1.4 1,271,760 + Shewana3_1083 0.23 -0.2 1,271,768 - Shewana3_1083 0.23 +0.3 1,271,790 - Shewana3_1083 0.24 -1.1 1,271,851 + Shewana3_1083 0.25 -1.8 1,271,860 - Shewana3_1083 0.26 -0.9 1,271,874 + Shewana3_1083 0.26 +0.4
Or see this region's nucleotide sequence