Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0571 and Shewana3_0572 are separated by 558 nucleotides Shewana3_0572 and Shewana3_0573 are separated by 65 nucleotides
Shewana3_0571: Shewana3_0571 - response regulator receiver protein (RefSeq), at 663,306 to 664,301
_0571
Shewana3_0572: Shewana3_0572 - enoyl-CoA hydratase (RefSeq), at 664,860 to 665,666
_0572
Shewana3_0573: Shewana3_0573 - hypothetical protein (RefSeq), at 665,732 to 666,691
_0573
Position (kb) 664
665
666 Strain fitness (log2 ratio) -2
-1
0
1
2 at 663.887 kb on + strand, within Shewana3_0571 at 664.109 kb on + strand, within Shewana3_0571 at 664.109 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.166 kb on - strand, within Shewana3_0571 at 664.246 kb on - strand at 664.248 kb on - strand at 664.281 kb on + strand at 664.281 kb on + strand at 664.281 kb on + strand at 664.294 kb on - strand at 664.336 kb on + strand at 664.394 kb on - strand at 664.646 kb on - strand at 664.903 kb on + strand at 664.911 kb on - strand at 665.159 kb on + strand, within Shewana3_0572 at 665.159 kb on + strand, within Shewana3_0572 at 665.186 kb on + strand, within Shewana3_0572 at 665.192 kb on - strand, within Shewana3_0572 at 665.295 kb on + strand, within Shewana3_0572 at 665.544 kb on + strand, within Shewana3_0572 at 665.544 kb on + strand, within Shewana3_0572 at 665.546 kb on + strand, within Shewana3_0572 at 665.552 kb on - strand, within Shewana3_0572 at 665.552 kb on - strand, within Shewana3_0572 at 665.552 kb on - strand, within Shewana3_0572 at 665.569 kb on + strand, within Shewana3_0572 at 665.772 kb on - strand at 665.846 kb on + strand, within Shewana3_0573 at 666.221 kb on + strand, within Shewana3_0573 at 666.229 kb on - strand, within Shewana3_0573 at 666.304 kb on + strand, within Shewana3_0573 at 666.312 kb on - strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.581 kb on - strand, within Shewana3_0573
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 663,887 + Shewana3_0571 0.58 -1.0 664,109 + Shewana3_0571 0.81 +0.2 664,109 - Shewana3_0571 0.81 -0.2 664,166 - Shewana3_0571 0.86 +1.0 664,166 - Shewana3_0571 0.86 +0.3 664,166 - Shewana3_0571 0.86 -0.3 664,246 - -0.1 664,248 - -0.0 664,281 + +1.7 664,281 + -0.3 664,281 + -0.5 664,294 - -0.4 664,336 + +0.2 664,394 - +0.2 664,646 - +2.1 664,903 + -2.2 664,911 - -0.7 665,159 + Shewana3_0572 0.37 +0.2 665,159 + Shewana3_0572 0.37 -0.2 665,186 + Shewana3_0572 0.40 -0.2 665,192 - Shewana3_0572 0.41 +1.7 665,295 + Shewana3_0572 0.54 -0.8 665,544 + Shewana3_0572 0.85 -0.5 665,544 + Shewana3_0572 0.85 -0.1 665,546 + Shewana3_0572 0.85 +0.1 665,552 - Shewana3_0572 0.86 +1.7 665,552 - Shewana3_0572 0.86 +1.7 665,552 - Shewana3_0572 0.86 +1.7 665,569 + Shewana3_0572 0.88 -0.0 665,772 - -0.2 665,846 + Shewana3_0573 0.12 +0.2 666,221 + Shewana3_0573 0.51 -0.2 666,229 - Shewana3_0573 0.52 +0.7 666,304 + Shewana3_0573 0.60 -0.1 666,312 - Shewana3_0573 0.60 +1.7 666,437 + Shewana3_0573 0.73 -0.8 666,437 + Shewana3_0573 0.73 -0.5 666,581 - Shewana3_0573 0.88 -0.0
Or see this region's nucleotide sequence