Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0482 and Shewana3_0483 are separated by 157 nucleotides Shewana3_0483 and Shewana3_0484 overlap by 4 nucleotides Shewana3_0484 and Shewana3_0485 are separated by 44 nucleotides Shewana3_0485 and Shewana3_0486 are separated by 255 nucleotides
Shewana3_0482: Shewana3_0482 - peptidase S9 prolyl oligopeptidase (RefSeq), at 564,442 to 566,502
_0482
Shewana3_0483: Shewana3_0483 - hypothetical protein (RefSeq), at 566,660 to 567,178
_0483
Shewana3_0484: Shewana3_0484 - XRE family transcriptional regulator (RefSeq), at 567,175 to 567,408
_0484
Shewana3_0485: Shewana3_0485 - hypothetical protein (RefSeq), at 567,453 to 568,031
_0485
Shewana3_0486: Shewana3_0486 - redoxin domain-containing protein (RefSeq), at 568,287 to 568,871
_0486
Position (kb) 567
568 Strain fitness (log2 ratio) -1
0
1 at 566.470 kb on + strand at 566.632 kb on - strand at 566.642 kb on - strand at 567.130 kb on + strand at 567.243 kb on + strand, within Shewana3_0484 at 567.251 kb on - strand, within Shewana3_0484 at 567.251 kb on - strand, within Shewana3_0484 at 567.251 kb on - strand, within Shewana3_0484 at 567.297 kb on + strand, within Shewana3_0484 at 567.415 kb on + strand at 567.415 kb on + strand at 567.415 kb on + strand at 567.422 kb on + strand at 567.484 kb on + strand at 567.497 kb on - strand at 567.532 kb on - strand, within Shewana3_0485 at 567.735 kb on - strand, within Shewana3_0485 at 567.761 kb on - strand, within Shewana3_0485
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 566,470 + -0.7 566,632 - -1.1 566,642 - -0.5 567,130 + -0.4 567,243 + Shewana3_0484 0.29 -1.2 567,251 - Shewana3_0484 0.32 +1.7 567,251 - Shewana3_0484 0.32 +0.1 567,251 - Shewana3_0484 0.32 -0.0 567,297 + Shewana3_0484 0.52 -1.2 567,415 + -0.5 567,415 + -0.6 567,415 + -0.0 567,422 + -0.3 567,484 + +0.1 567,497 - -0.4 567,532 - Shewana3_0485 0.14 -0.7 567,735 - Shewana3_0485 0.49 -0.7 567,761 - Shewana3_0485 0.53 -1.0
Or see this region's nucleotide sequence