Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0320 and Shewana3_0321 are separated by 57 nucleotides Shewana3_0321 and Shewana3_0322 are separated by 349 nucleotides Shewana3_0322 and Shewana3_0323 are separated by 200 nucleotides Shewana3_0323 and Shewana3_0324 are separated by 54 nucleotides
Shewana3_0320: Shewana3_0320 - benzoate transporter (RefSeq), at 354,937 to 356,127
_0320
Shewana3_0321: Shewana3_0321 - GCN5-related N-acetyltransferase (RefSeq), at 356,185 to 356,640
_0321
Shewana3_0322: Shewana3_0322 - antibiotic acetyltransferase (RefSeq), at 356,990 to 357,637
_0322
Shewana3_0323: Shewana3_0323 - hypothetical protein (RefSeq), at 357,838 to 358,269
_0323
Shewana3_0324: Shewana3_0324 - hypothetical protein (RefSeq), at 358,324 to 358,800
_0324
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1 at 355.991 kb on - strand, within Shewana3_0320 at 356.150 kb on - strand at 356.173 kb on - strand at 356.183 kb on - strand at 356.183 kb on - strand at 356.282 kb on - strand, within Shewana3_0321 at 356.370 kb on + strand, within Shewana3_0321 at 356.482 kb on + strand, within Shewana3_0321 at 356.500 kb on - strand, within Shewana3_0321 at 356.503 kb on + strand, within Shewana3_0321 at 356.529 kb on + strand, within Shewana3_0321 at 356.613 kb on + strand at 356.737 kb on + strand at 356.765 kb on + strand at 356.831 kb on - strand at 356.877 kb on - strand at 356.903 kb on + strand at 356.924 kb on + strand at 357.123 kb on + strand, within Shewana3_0322 at 357.138 kb on - strand, within Shewana3_0322 at 357.192 kb on - strand, within Shewana3_0322 at 357.326 kb on + strand, within Shewana3_0322 at 357.331 kb on + strand, within Shewana3_0322 at 357.339 kb on + strand, within Shewana3_0322 at 357.339 kb on + strand, within Shewana3_0322 at 357.439 kb on + strand, within Shewana3_0322 at 357.447 kb on - strand, within Shewana3_0322 at 357.508 kb on + strand, within Shewana3_0322 at 357.565 kb on + strand, within Shewana3_0322 at 357.569 kb on - strand, within Shewana3_0322 at 357.664 kb on + strand at 357.727 kb on + strand at 357.727 kb on + strand at 357.825 kb on + strand at 357.868 kb on - strand at 357.982 kb on - strand, within Shewana3_0323 at 357.995 kb on + strand, within Shewana3_0323 at 358.001 kb on - strand, within Shewana3_0323 at 358.003 kb on - strand, within Shewana3_0323 at 358.003 kb on - strand, within Shewana3_0323 at 358.043 kb on - strand, within Shewana3_0323 at 358.078 kb on + strand, within Shewana3_0323 at 358.115 kb on - strand, within Shewana3_0323 at 358.154 kb on + strand, within Shewana3_0323 at 358.154 kb on + strand, within Shewana3_0323 at 358.197 kb on + strand, within Shewana3_0323 at 358.205 kb on - strand, within Shewana3_0323 at 358.207 kb on - strand, within Shewana3_0323 at 358.207 kb on - strand, within Shewana3_0323 at 358.356 kb on - strand at 358.374 kb on - strand, within Shewana3_0324 at 358.397 kb on + strand, within Shewana3_0324 at 358.410 kb on - strand, within Shewana3_0324 at 358.423 kb on - strand, within Shewana3_0324 at 358.438 kb on + strand, within Shewana3_0324 at 358.438 kb on + strand, within Shewana3_0324 at 358.446 kb on - strand, within Shewana3_0324 at 358.447 kb on - strand, within Shewana3_0324 at 358.628 kb on + strand, within Shewana3_0324 at 358.636 kb on - strand, within Shewana3_0324
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 355,991 - Shewana3_0320 0.88 -0.2 356,150 - -0.2 356,173 - +0.1 356,183 - -1.2 356,183 - -1.6 356,282 - Shewana3_0321 0.21 -0.5 356,370 + Shewana3_0321 0.41 -2.7 356,482 + Shewana3_0321 0.65 -0.2 356,500 - Shewana3_0321 0.69 -0.9 356,503 + Shewana3_0321 0.70 -1.5 356,529 + Shewana3_0321 0.75 -0.4 356,613 + +0.9 356,737 + +0.2 356,765 + +0.1 356,831 - -0.2 356,877 - -0.1 356,903 + -0.9 356,924 + -0.3 357,123 + Shewana3_0322 0.21 -0.4 357,138 - Shewana3_0322 0.23 -1.6 357,192 - Shewana3_0322 0.31 -0.8 357,326 + Shewana3_0322 0.52 -0.4 357,331 + Shewana3_0322 0.53 -0.4 357,339 + Shewana3_0322 0.54 +0.0 357,339 + Shewana3_0322 0.54 -0.5 357,439 + Shewana3_0322 0.69 -0.8 357,447 - Shewana3_0322 0.71 -1.1 357,508 + Shewana3_0322 0.80 -0.8 357,565 + Shewana3_0322 0.89 -1.0 357,569 - Shewana3_0322 0.89 -2.4 357,664 + -0.3 357,727 + -0.4 357,727 + -0.3 357,825 + -0.1 357,868 - -0.5 357,982 - Shewana3_0323 0.33 +0.1 357,995 + Shewana3_0323 0.36 +0.5 358,001 - Shewana3_0323 0.38 -0.7 358,003 - Shewana3_0323 0.38 -0.2 358,003 - Shewana3_0323 0.38 +0.2 358,043 - Shewana3_0323 0.47 -0.3 358,078 + Shewana3_0323 0.56 -0.5 358,115 - Shewana3_0323 0.64 -0.2 358,154 + Shewana3_0323 0.73 +0.2 358,154 + Shewana3_0323 0.73 -0.2 358,197 + Shewana3_0323 0.83 -0.0 358,205 - Shewana3_0323 0.85 -0.6 358,207 - Shewana3_0323 0.85 -1.2 358,207 - Shewana3_0323 0.85 -0.8 358,356 - +0.6 358,374 - Shewana3_0324 0.10 +1.1 358,397 + Shewana3_0324 0.15 +0.8 358,410 - Shewana3_0324 0.18 -0.4 358,423 - Shewana3_0324 0.21 -0.2 358,438 + Shewana3_0324 0.24 +0.2 358,438 + Shewana3_0324 0.24 +1.0 358,446 - Shewana3_0324 0.26 -0.6 358,447 - Shewana3_0324 0.26 +0.1 358,628 + Shewana3_0324 0.64 -0.3 358,636 - Shewana3_0324 0.65 -1.0
Or see this region's nucleotide sequence