Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0160

Experiment: A22 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0159 and Shewana3_0160 are separated by 1 nucleotidesShewana3_0160 and Shewana3_0161 are separated by 14 nucleotidesShewana3_0161 and Shewana3_0162 are separated by 63 nucleotides Shewana3_0159: Shewana3_0159 - general secretion pathway protein L (RefSeq), at 183,125 to 184,312 _0159 Shewana3_0160: Shewana3_0160 - general secretion pathway M protein (RefSeq), at 184,314 to 184,790 _0160 Shewana3_0161: Shewana3_0161 - type II secretion system protein N (RefSeq), at 184,805 to 185,566 _0161 Shewana3_0162: Shewana3_0162 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 185,630 to 186,292 _0162 Position (kb) 184 185Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 183.594 kb on + strand, within Shewana3_0159at 183.602 kb on - strand, within Shewana3_0159at 183.611 kb on + strand, within Shewana3_0159at 183.634 kb on + strand, within Shewana3_0159at 183.634 kb on + strand, within Shewana3_0159at 183.634 kb on + strand, within Shewana3_0159at 183.642 kb on - strand, within Shewana3_0159at 183.674 kb on + strand, within Shewana3_0159at 183.802 kb on - strand, within Shewana3_0159at 183.805 kb on + strand, within Shewana3_0159at 183.893 kb on + strand, within Shewana3_0159at 183.893 kb on + strand, within Shewana3_0159at 183.893 kb on + strand, within Shewana3_0159at 183.893 kb on + strand, within Shewana3_0159at 183.901 kb on - strand, within Shewana3_0159at 183.921 kb on - strand, within Shewana3_0159at 183.964 kb on + strand, within Shewana3_0159at 184.020 kb on - strand, within Shewana3_0159at 184.049 kb on + strand, within Shewana3_0159at 184.057 kb on - strand, within Shewana3_0159at 184.057 kb on - strand, within Shewana3_0159at 184.107 kb on + strand, within Shewana3_0159at 184.107 kb on + strand, within Shewana3_0159at 184.115 kb on - strand, within Shewana3_0159at 184.115 kb on - strand, within Shewana3_0159at 184.467 kb on - strand, within Shewana3_0160at 184.472 kb on + strand, within Shewana3_0160at 184.472 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.566 kb on - strand, within Shewana3_0160at 184.576 kb on + strand, within Shewana3_0160at 184.627 kb on - strand, within Shewana3_0160at 184.723 kb on + strand, within Shewana3_0160at 184.947 kb on - strand, within Shewana3_0161at 185.077 kb on - strand, within Shewana3_0161at 185.108 kb on + strand, within Shewana3_0161at 185.146 kb on + strand, within Shewana3_0161at 185.174 kb on - strand, within Shewana3_0161at 185.375 kb on - strand, within Shewana3_0161at 185.490 kb on - strandat 185.529 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.05 mg/ml
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183,594 + Shewana3_0159 0.39 -3.3
183,602 - Shewana3_0159 0.40 -2.4
183,611 + Shewana3_0159 0.41 -2.8
183,634 + Shewana3_0159 0.43 -3.3
183,634 + Shewana3_0159 0.43 -3.2
183,634 + Shewana3_0159 0.43 -3.2
183,642 - Shewana3_0159 0.44 -0.2
183,674 + Shewana3_0159 0.46 -2.5
183,802 - Shewana3_0159 0.57 -0.3
183,805 + Shewana3_0159 0.57 -2.8
183,893 + Shewana3_0159 0.65 -2.8
183,893 + Shewana3_0159 0.65 -1.5
183,893 + Shewana3_0159 0.65 -3.2
183,893 + Shewana3_0159 0.65 -2.1
183,901 - Shewana3_0159 0.65 -3.5
183,921 - Shewana3_0159 0.67 -3.0
183,964 + Shewana3_0159 0.71 -4.2
184,020 - Shewana3_0159 0.75 -2.1
184,049 + Shewana3_0159 0.78 -1.7
184,057 - Shewana3_0159 0.78 -1.3
184,057 - Shewana3_0159 0.78 -3.1
184,107 + Shewana3_0159 0.83 -2.7
184,107 + Shewana3_0159 0.83 -3.3
184,115 - Shewana3_0159 0.83 -0.5
184,115 - Shewana3_0159 0.83 +0.8
184,467 - Shewana3_0160 0.32 -1.2
184,472 + Shewana3_0160 0.33 -3.0
184,472 + Shewana3_0160 0.33 -2.0
184,558 + Shewana3_0160 0.51 -4.6
184,558 + Shewana3_0160 0.51 -2.7
184,558 + Shewana3_0160 0.51 -3.1
184,558 + Shewana3_0160 0.51 -2.3
184,558 + Shewana3_0160 0.51 -2.2
184,566 - Shewana3_0160 0.53 -2.6
184,576 + Shewana3_0160 0.55 -1.3
184,627 - Shewana3_0160 0.66 +0.0
184,723 + Shewana3_0160 0.86 -2.7
184,947 - Shewana3_0161 0.19 +0.2
185,077 - Shewana3_0161 0.36 -2.1
185,108 + Shewana3_0161 0.40 -1.6
185,146 + Shewana3_0161 0.45 -0.9
185,174 - Shewana3_0161 0.48 -0.5
185,375 - Shewana3_0161 0.75 +0.7
185,490 - -0.8
185,529 + -0.6

Or see this region's nucleotide sequence