Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0012
Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | A22 0.05 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 12,433 | + | recF | Shewana3_0011 | 0.11 | -0.9 |
| 12,511 | + | recF | Shewana3_0011 | 0.18 | -1.4 |
| 12,519 | - | recF | Shewana3_0011 | 0.19 | -1.5 |
| 12,524 | - | recF | Shewana3_0011 | 0.19 | -1.7 |
| 12,541 | - | recF | Shewana3_0011 | 0.21 | +0.9 |
| 12,542 | - | recF | Shewana3_0011 | 0.21 | -2.2 |
| 12,877 | + | recF | Shewana3_0011 | 0.52 | -0.7 |
| 12,885 | - | recF | Shewana3_0011 | 0.52 | -1.5 |
| 12,895 | + | recF | Shewana3_0011 | 0.53 | -3.1 |
| 12,922 | + | recF | Shewana3_0011 | 0.56 | -2.0 |
| 12,930 | - | recF | Shewana3_0011 | 0.57 | -1.8 |
| 12,967 | + | recF | Shewana3_0011 | 0.60 | -1.1 |
| 13,005 | + | recF | Shewana3_0011 | 0.64 | -0.7 |
| 13,042 | + | recF | Shewana3_0011 | 0.67 | -1.8 |
| 16,131 | - | Shewana3_0013 | 0.33 | -1.2 | |
| 16,131 | - | Shewana3_0013 | 0.33 | -0.6 | |
| 16,247 | - | Shewana3_0013 | 0.50 | +0.1 | |
| 16,480 | + | Shewana3_0013 | 0.86 | +0.6 | |
| 16,598 | - | +0.2 | |||
| 16,824 | - | Shewana3_0014 | 0.15 | +0.9 |
Or see this region's nucleotide sequence