Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4317

Experiment: A22 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4316 and Shewana3_4317 are separated by 204 nucleotidesShewana3_4317 and Shewana3_4318 are separated by 113 nucleotides Shewana3_4316: Shewana3_4316 - phage integrase family protein (RefSeq), at 203,946 to 204,968 _4316 Shewana3_4317: Shewana3_4317 - chromosome segregation ATPases-like protein (RefSeq), at 205,173 to 206,222 _4317 Shewana3_4318: Shewana3_4318 - transposase Tn3 family protein (RefSeq), at 206,336 to 209,230 _4318 Position (kb) 205 206 207Strain fitness (log2 ratio) -1 0 1at 204.252 kb on - strand, within Shewana3_4316at 204.257 kb on + strand, within Shewana3_4316at 204.328 kb on + strand, within Shewana3_4316at 204.440 kb on - strand, within Shewana3_4316at 204.672 kb on - strand, within Shewana3_4316at 204.677 kb on - strand, within Shewana3_4316at 204.711 kb on + strand, within Shewana3_4316at 204.716 kb on + strand, within Shewana3_4316at 204.716 kb on + strand, within Shewana3_4316at 204.724 kb on + strand, within Shewana3_4316at 204.842 kb on - strand, within Shewana3_4316at 205.237 kb on + strandat 205.269 kb on + strandat 205.277 kb on - strandat 205.379 kb on + strand, within Shewana3_4317at 205.521 kb on + strand, within Shewana3_4317at 205.521 kb on - strand, within Shewana3_4317at 205.569 kb on + strand, within Shewana3_4317at 205.569 kb on + strand, within Shewana3_4317at 205.709 kb on + strand, within Shewana3_4317at 205.828 kb on - strand, within Shewana3_4317at 205.831 kb on + strand, within Shewana3_4317at 205.848 kb on - strand, within Shewana3_4317at 205.906 kb on - strand, within Shewana3_4317at 205.916 kb on - strand, within Shewana3_4317at 205.952 kb on + strand, within Shewana3_4317at 206.032 kb on - strand, within Shewana3_4317at 206.134 kb on - strandat 206.404 kb on + strandat 206.562 kb on - strandat 206.562 kb on - strandat 206.631 kb on + strand, within Shewana3_4318at 206.636 kb on + strand, within Shewana3_4318at 206.644 kb on - strand, within Shewana3_4318at 206.658 kb on + strand, within Shewana3_4318at 206.659 kb on - strand, within Shewana3_4318at 206.707 kb on - strand, within Shewana3_4318at 206.954 kb on - strand, within Shewana3_4318at 207.013 kb on - strand, within Shewana3_4318at 207.048 kb on + strand, within Shewana3_4318at 207.160 kb on + strand, within Shewana3_4318

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.05 mg/ml
remove
204,252 - Shewana3_4316 0.30 -0.2
204,257 + Shewana3_4316 0.30 -0.6
204,328 + Shewana3_4316 0.37 -0.4
204,440 - Shewana3_4316 0.48 -0.3
204,672 - Shewana3_4316 0.71 -0.2
204,677 - Shewana3_4316 0.71 -0.6
204,711 + Shewana3_4316 0.75 +0.2
204,716 + Shewana3_4316 0.75 -0.6
204,716 + Shewana3_4316 0.75 +0.1
204,724 + Shewana3_4316 0.76 +0.2
204,842 - Shewana3_4316 0.88 -0.3
205,237 + -0.8
205,269 + +0.1
205,277 - +0.6
205,379 + Shewana3_4317 0.20 -1.2
205,521 + Shewana3_4317 0.33 -0.5
205,521 - Shewana3_4317 0.33 -0.8
205,569 + Shewana3_4317 0.38 -1.0
205,569 + Shewana3_4317 0.38 -0.3
205,709 + Shewana3_4317 0.51 +0.2
205,828 - Shewana3_4317 0.62 -1.3
205,831 + Shewana3_4317 0.63 -0.7
205,848 - Shewana3_4317 0.64 -0.9
205,906 - Shewana3_4317 0.70 -0.0
205,916 - Shewana3_4317 0.71 +1.6
205,952 + Shewana3_4317 0.74 -1.5
206,032 - Shewana3_4317 0.82 +1.6
206,134 - -0.0
206,404 + +0.2
206,562 - -0.5
206,562 - +0.1
206,631 + Shewana3_4318 0.10 -0.4
206,636 + Shewana3_4318 0.10 +0.1
206,644 - Shewana3_4318 0.11 -0.6
206,658 + Shewana3_4318 0.11 -0.3
206,659 - Shewana3_4318 0.11 -0.3
206,707 - Shewana3_4318 0.13 -0.5
206,954 - Shewana3_4318 0.21 -0.3
207,013 - Shewana3_4318 0.23 -0.5
207,048 + Shewana3_4318 0.25 -0.3
207,160 + Shewana3_4318 0.28 -1.1

Or see this region's nucleotide sequence