Experiment: A22 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4192 and Shewana3_4193 are separated by 130 nucleotides Shewana3_4193 and Shewana3_4194 are separated by 93 nucleotides Shewana3_4194 and Shewana3_4195 are separated by 128 nucleotides Shewana3_4195 and Shewana3_4196 are separated by 121 nucleotides
Shewana3_4192: Shewana3_4192 - hypothetical protein (RefSeq), at 55,345 to 55,773
_4192
Shewana3_4193: Shewana3_4193 - hypothetical protein (RefSeq), at 55,904 to 56,452
_4193
Shewana3_4194: Shewana3_4194 - C-5 cytosine-specific DNA methylase (RefSeq), at 56,546 to 57,919
_4194
Shewana3_4195: Shewana3_4195 - hypothetical protein (RefSeq), at 58,048 to 58,335
_4195
Shewana3_4196: Shewana3_4196 - hypothetical protein (RefSeq), at 58,457 to 58,891
_4196
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 55.851 kb on - strand at 56.032 kb on + strand, within Shewana3_4193 at 56.175 kb on + strand, within Shewana3_4193 at 56.229 kb on - strand, within Shewana3_4193 at 56.239 kb on - strand, within Shewana3_4193 at 56.270 kb on + strand, within Shewana3_4193 at 56.273 kb on - strand, within Shewana3_4193 at 56.278 kb on - strand, within Shewana3_4193 at 56.358 kb on - strand, within Shewana3_4193 at 56.538 kb on - strand at 56.770 kb on + strand, within Shewana3_4194 at 56.778 kb on - strand, within Shewana3_4194 at 56.783 kb on - strand, within Shewana3_4194 at 56.795 kb on + strand, within Shewana3_4194 at 56.852 kb on + strand, within Shewana3_4194 at 56.905 kb on + strand, within Shewana3_4194 at 56.913 kb on - strand, within Shewana3_4194 at 56.947 kb on + strand, within Shewana3_4194 at 56.955 kb on - strand, within Shewana3_4194 at 56.991 kb on - strand, within Shewana3_4194 at 57.115 kb on + strand, within Shewana3_4194 at 57.118 kb on - strand, within Shewana3_4194 at 57.120 kb on + strand, within Shewana3_4194 at 57.120 kb on + strand, within Shewana3_4194 at 57.146 kb on - strand, within Shewana3_4194 at 57.221 kb on + strand, within Shewana3_4194 at 57.400 kb on + strand, within Shewana3_4194 at 57.408 kb on - strand, within Shewana3_4194 at 57.512 kb on - strand, within Shewana3_4194 at 57.594 kb on + strand, within Shewana3_4194 at 57.753 kb on - strand, within Shewana3_4194 at 57.755 kb on + strand, within Shewana3_4194 at 57.756 kb on + strand, within Shewana3_4194 at 57.763 kb on - strand, within Shewana3_4194 at 57.764 kb on - strand, within Shewana3_4194 at 57.855 kb on + strand at 57.976 kb on - strand at 57.982 kb on + strand at 57.982 kb on - strand at 58.080 kb on - strand, within Shewana3_4195 at 58.201 kb on - strand, within Shewana3_4195 at 58.219 kb on + strand, within Shewana3_4195 at 58.292 kb on - strand, within Shewana3_4195 at 58.343 kb on + strand at 58.353 kb on + strand at 58.353 kb on + strand at 58.360 kb on + strand at 58.370 kb on + strand at 58.378 kb on - strand at 58.381 kb on + strand at 58.427 kb on - strand at 58.434 kb on + strand at 58.454 kb on + strand at 58.547 kb on - strand, within Shewana3_4196 at 58.564 kb on + strand, within Shewana3_4196 at 58.572 kb on - strand, within Shewana3_4196 at 58.582 kb on - strand, within Shewana3_4196 at 58.586 kb on - strand, within Shewana3_4196 at 58.633 kb on + strand, within Shewana3_4196 at 58.687 kb on - strand, within Shewana3_4196
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.05 mg/ml remove 55,851 - -0.3 56,032 + Shewana3_4193 0.23 +0.4 56,175 + Shewana3_4193 0.49 -0.6 56,229 - Shewana3_4193 0.59 -0.2 56,239 - Shewana3_4193 0.61 -1.7 56,270 + Shewana3_4193 0.67 -0.0 56,273 - Shewana3_4193 0.67 -0.2 56,278 - Shewana3_4193 0.68 -0.6 56,358 - Shewana3_4193 0.83 -0.5 56,538 - -0.8 56,770 + Shewana3_4194 0.16 -0.4 56,778 - Shewana3_4194 0.17 -0.1 56,783 - Shewana3_4194 0.17 -0.3 56,795 + Shewana3_4194 0.18 -0.0 56,852 + Shewana3_4194 0.22 -1.6 56,905 + Shewana3_4194 0.26 +0.8 56,913 - Shewana3_4194 0.27 -0.1 56,947 + Shewana3_4194 0.29 +0.2 56,955 - Shewana3_4194 0.30 -0.6 56,991 - Shewana3_4194 0.32 -0.1 57,115 + Shewana3_4194 0.41 -0.1 57,118 - Shewana3_4194 0.42 -0.5 57,120 + Shewana3_4194 0.42 +0.2 57,120 + Shewana3_4194 0.42 -0.3 57,146 - Shewana3_4194 0.44 +0.0 57,221 + Shewana3_4194 0.49 -0.4 57,400 + Shewana3_4194 0.62 +0.8 57,408 - Shewana3_4194 0.63 -0.4 57,512 - Shewana3_4194 0.70 -0.3 57,594 + Shewana3_4194 0.76 +0.2 57,753 - Shewana3_4194 0.88 -0.3 57,755 + Shewana3_4194 0.88 +0.4 57,756 + Shewana3_4194 0.88 -0.2 57,763 - Shewana3_4194 0.89 -0.1 57,764 - Shewana3_4194 0.89 -1.2 57,855 + -0.2 57,976 - -0.2 57,982 + +0.4 57,982 - -0.4 58,080 - Shewana3_4195 0.11 -0.6 58,201 - Shewana3_4195 0.53 -0.5 58,219 + Shewana3_4195 0.59 -2.7 58,292 - Shewana3_4195 0.85 +0.6 58,343 + +0.1 58,353 + -1.3 58,353 + +0.2 58,360 + -0.6 58,370 + -0.2 58,378 - -0.6 58,381 + -1.0 58,427 - -0.0 58,434 + -1.3 58,454 + -0.5 58,547 - Shewana3_4196 0.21 +0.3 58,564 + Shewana3_4196 0.25 -0.9 58,572 - Shewana3_4196 0.26 +0.4 58,582 - Shewana3_4196 0.29 -0.6 58,586 - Shewana3_4196 0.30 -0.6 58,633 + Shewana3_4196 0.40 -0.0 58,687 - Shewana3_4196 0.53 -0.4
Or see this region's nucleotide sequence