Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1210

Experiment: MoYLS4 with HQNO 20uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntplsX and rpmF overlap by 8 nucleotidesrpmF and DVU1210 are separated by 44 nucleotidesDVU1210 and rpmB are separated by 202 nucleotidesrpmB and fsxA are separated by 306 nucleotides DVU1208: plsX - fatty acid/phospholipid synthesis protein PlsX (TIGR), at 1,299,241 to 1,300,278 plsX DVU1209: rpmF - ribosomal protein L32 (TIGR), at 1,300,271 to 1,300,450 rpmF DVU1210: DVU1210 - conserved hypothetical protein (TIGR), at 1,300,495 to 1,301,031 DVU1210 DVU1211: rpmB - ribosomal protein L28 (TIGR), at 1,301,234 to 1,301,443 rpmB DVU1212: fsxA - fxsA protein (TIGR), at 1,301,750 to 1,302,310 fsxA Position (kb) 1300 1301 1302Strain fitness (log2 ratio) -1 0 1at 1300.615 kb on - strand, within DVU1210at 1301.058 kb on - strandat 1301.840 kb on - strand, within fsxAat 1301.851 kb on - strand, within fsxAat 1301.876 kb on + strand, within fsxAat 1301.909 kb on - strand, within fsxAat 1301.936 kb on + strand, within fsxAat 1301.952 kb on - strand, within fsxA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with HQNO 20uM
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1,300,615 - DVU1210 0.22 +0.5
1,301,058 - -0.7
1,301,840 - fsxA DVU1212 0.16 -0.2
1,301,851 - fsxA DVU1212 0.18 -0.0
1,301,876 + fsxA DVU1212 0.22 -0.2
1,301,909 - fsxA DVU1212 0.28 -0.7
1,301,936 + fsxA DVU1212 0.33 -0.1
1,301,952 - fsxA DVU1212 0.36 -0.5

Or see this region's nucleotide sequence