Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37480

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS37475 and RR42_RS37480 are separated by 135 nucleotidesRR42_RS37480 and RR42_RS37485 are separated by 79 nucleotides RR42_RS37475: RR42_RS37475 - peptide chain release factor 3, at 3,886,294 to 3,887,868 _RS37475 RR42_RS37480: RR42_RS37480 - membrane protein, at 3,888,004 to 3,888,969 _RS37480 RR42_RS37485: RR42_RS37485 - membrane protein, at 3,889,049 to 3,889,216 _RS37485 Position (kb) 3888 3889Strain fitness (log2 ratio) -2 -1 0 1at 3887.120 kb on + strand, within RR42_RS37475at 3887.121 kb on - strand, within RR42_RS37475at 3887.327 kb on + strand, within RR42_RS37475at 3887.327 kb on + strand, within RR42_RS37475at 3887.327 kb on + strand, within RR42_RS37475at 3887.327 kb on + strand, within RR42_RS37475at 3887.328 kb on - strand, within RR42_RS37475at 3887.454 kb on + strand, within RR42_RS37475at 3887.454 kb on + strand, within RR42_RS37475at 3887.455 kb on - strand, within RR42_RS37475at 3887.576 kb on + strand, within RR42_RS37475at 3887.576 kb on + strand, within RR42_RS37475at 3887.576 kb on + strand, within RR42_RS37475at 3887.576 kb on + strand, within RR42_RS37475at 3887.577 kb on - strand, within RR42_RS37475at 3887.577 kb on - strand, within RR42_RS37475at 3887.577 kb on - strand, within RR42_RS37475at 3887.800 kb on - strandat 3887.855 kb on - strandat 3888.086 kb on + strandat 3888.195 kb on + strand, within RR42_RS37480at 3888.195 kb on + strand, within RR42_RS37480at 3888.196 kb on - strand, within RR42_RS37480at 3888.206 kb on + strand, within RR42_RS37480at 3888.813 kb on + strand, within RR42_RS37480at 3888.813 kb on + strand, within RR42_RS37480at 3888.814 kb on - strand, within RR42_RS37480at 3888.814 kb on - strand, within RR42_RS37480at 3888.814 kb on - strand, within RR42_RS37480at 3888.815 kb on + strand, within RR42_RS37480at 3888.815 kb on + strand, within RR42_RS37480at 3888.815 kb on + strand, within RR42_RS37480at 3888.815 kb on + strand, within RR42_RS37480at 3888.815 kb on + strand, within RR42_RS37480at 3888.815 kb on + strand, within RR42_RS37480at 3888.815 kb on + strand, within RR42_RS37480at 3888.815 kb on + strand, within RR42_RS37480at 3888.816 kb on - strand, within RR42_RS37480at 3888.816 kb on - strand, within RR42_RS37480at 3888.816 kb on - strand, within RR42_RS37480at 3888.816 kb on - strand, within RR42_RS37480at 3888.816 kb on - strand, within RR42_RS37480at 3888.816 kb on - strand, within RR42_RS37480at 3888.816 kb on - strand, within RR42_RS37480at 3888.816 kb on - strand, within RR42_RS37480at 3888.816 kb on - strand, within RR42_RS37480at 3889.029 kb on - strandat 3889.029 kb on - strandat 3889.051 kb on - strandat 3889.206 kb on + strandat 3889.207 kb on - strandat 3889.272 kb on + strandat 3889.272 kb on + strandat 3889.272 kb on + strandat 3889.273 kb on - strandat 3889.273 kb on - strandat 3889.354 kb on - strandat 3889.390 kb on + strandat 3889.773 kb on + strandat 3889.774 kb on - strandat 3889.826 kb on + strandat 3889.845 kb on + strandat 3889.845 kb on + strandat 3889.845 kb on + strandat 3889.845 kb on + strandat 3889.846 kb on - strandat 3889.901 kb on + strandat 3889.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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3,887,120 + RR42_RS37475 0.52 +1.1
3,887,121 - RR42_RS37475 0.53 -0.2
3,887,327 + RR42_RS37475 0.66 -2.0
3,887,327 + RR42_RS37475 0.66 -0.4
3,887,327 + RR42_RS37475 0.66 -1.8
3,887,327 + RR42_RS37475 0.66 -0.5
3,887,328 - RR42_RS37475 0.66 -0.3
3,887,454 + RR42_RS37475 0.74 -0.5
3,887,454 + RR42_RS37475 0.74 -1.0
3,887,455 - RR42_RS37475 0.74 +0.1
3,887,576 + RR42_RS37475 0.81 +0.3
3,887,576 + RR42_RS37475 0.81 -1.2
3,887,576 + RR42_RS37475 0.81 -0.8
3,887,576 + RR42_RS37475 0.81 -2.4
3,887,577 - RR42_RS37475 0.81 +0.2
3,887,577 - RR42_RS37475 0.81 -0.7
3,887,577 - RR42_RS37475 0.81 -1.3
3,887,800 - -0.4
3,887,855 - -0.2
3,888,086 + -0.8
3,888,195 + RR42_RS37480 0.20 -1.5
3,888,195 + RR42_RS37480 0.20 -0.1
3,888,196 - RR42_RS37480 0.20 +1.0
3,888,206 + RR42_RS37480 0.21 -0.5
3,888,813 + RR42_RS37480 0.84 +0.2
3,888,813 + RR42_RS37480 0.84 -0.1
3,888,814 - RR42_RS37480 0.84 +0.2
3,888,814 - RR42_RS37480 0.84 +0.2
3,888,814 - RR42_RS37480 0.84 -1.3
3,888,815 + RR42_RS37480 0.84 -1.0
3,888,815 + RR42_RS37480 0.84 -1.6
3,888,815 + RR42_RS37480 0.84 -0.4
3,888,815 + RR42_RS37480 0.84 -0.1
3,888,815 + RR42_RS37480 0.84 +0.7
3,888,815 + RR42_RS37480 0.84 +0.3
3,888,815 + RR42_RS37480 0.84 +0.1
3,888,815 + RR42_RS37480 0.84 -0.5
3,888,816 - RR42_RS37480 0.84 -2.3
3,888,816 - RR42_RS37480 0.84 +0.2
3,888,816 - RR42_RS37480 0.84 -0.6
3,888,816 - RR42_RS37480 0.84 +0.5
3,888,816 - RR42_RS37480 0.84 -0.7
3,888,816 - RR42_RS37480 0.84 -0.3
3,888,816 - RR42_RS37480 0.84 -2.4
3,888,816 - RR42_RS37480 0.84 +0.2
3,888,816 - RR42_RS37480 0.84 -0.1
3,889,029 - -0.7
3,889,029 - +0.6
3,889,051 - +0.1
3,889,206 + +0.4
3,889,207 - -0.7
3,889,272 + +0.5
3,889,272 + -0.1
3,889,272 + -0.4
3,889,273 - +0.8
3,889,273 - -0.2
3,889,354 - +0.1
3,889,390 + -0.3
3,889,773 + +0.1
3,889,774 - -2.4
3,889,826 + +0.1
3,889,845 + +0.4
3,889,845 + +0.0
3,889,845 + +0.4
3,889,845 + +1.3
3,889,846 - -0.4
3,889,901 + -0.7
3,889,902 - +0.6

Or see this region's nucleotide sequence