Experiment: R2A with nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26220 and RR42_RS26225 overlap by 4 nucleotides RR42_RS26225 and RR42_RS26230 are separated by 69 nucleotides
RR42_RS26220: RR42_RS26220 - citrate lyase subunit beta, at 1,240,008 to 1,240,925
_RS26220
RR42_RS26225: RR42_RS26225 - dimethylmenaquinone methyltransferase, at 1,240,922 to 1,241,578
_RS26225
RR42_RS26230: RR42_RS26230 - MFS transporter, at 1,241,648 to 1,242,919
_RS26230
Position (kb) 1240
1241
1242 Strain fitness (log2 ratio) -1
0
1 at 1239.952 kb on + strand at 1239.952 kb on + strand at 1240.096 kb on + strand at 1240.301 kb on + strand, within RR42_RS26220 at 1240.312 kb on + strand, within RR42_RS26220 at 1241.703 kb on + strand at 1241.703 kb on + strand at 1241.704 kb on - strand at 1241.796 kb on + strand, within RR42_RS26230 at 1241.796 kb on + strand, within RR42_RS26230 at 1241.796 kb on + strand, within RR42_RS26230 at 1241.797 kb on - strand, within RR42_RS26230 at 1241.797 kb on - strand, within RR42_RS26230 at 1241.868 kb on + strand, within RR42_RS26230 at 1241.868 kb on + strand, within RR42_RS26230 at 1241.869 kb on - strand, within RR42_RS26230 at 1241.901 kb on + strand, within RR42_RS26230 at 1241.901 kb on + strand, within RR42_RS26230 at 1241.902 kb on - strand, within RR42_RS26230 at 1242.120 kb on + strand, within RR42_RS26230 at 1242.300 kb on + strand, within RR42_RS26230 at 1242.300 kb on + strand, within RR42_RS26230 at 1242.300 kb on + strand, within RR42_RS26230 at 1242.300 kb on + strand, within RR42_RS26230 at 1242.300 kb on + strand, within RR42_RS26230 at 1242.300 kb on + strand, within RR42_RS26230 at 1242.300 kb on + strand, within RR42_RS26230 at 1242.301 kb on - strand, within RR42_RS26230 at 1242.301 kb on - strand, within RR42_RS26230 at 1242.301 kb on - strand, within RR42_RS26230 at 1242.301 kb on - strand, within RR42_RS26230 at 1242.456 kb on + strand, within RR42_RS26230 at 1242.457 kb on - strand, within RR42_RS26230 at 1242.539 kb on + strand, within RR42_RS26230 at 1242.539 kb on + strand, within RR42_RS26230 at 1242.540 kb on - strand, within RR42_RS26230 at 1242.577 kb on + strand, within RR42_RS26230
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM remove 1,239,952 + +0.8 1,239,952 + -0.0 1,240,096 + +0.1 1,240,301 + RR42_RS26220 0.32 -1.0 1,240,312 + RR42_RS26220 0.33 -0.9 1,241,703 + +0.0 1,241,703 + +1.3 1,241,704 - -0.0 1,241,796 + RR42_RS26230 0.12 -1.7 1,241,796 + RR42_RS26230 0.12 -0.6 1,241,796 + RR42_RS26230 0.12 +0.7 1,241,797 - RR42_RS26230 0.12 +0.1 1,241,797 - RR42_RS26230 0.12 -0.2 1,241,868 + RR42_RS26230 0.17 -0.9 1,241,868 + RR42_RS26230 0.17 +0.2 1,241,869 - RR42_RS26230 0.17 +0.6 1,241,901 + RR42_RS26230 0.20 -0.3 1,241,901 + RR42_RS26230 0.20 +0.2 1,241,902 - RR42_RS26230 0.20 -0.1 1,242,120 + RR42_RS26230 0.37 -1.3 1,242,300 + RR42_RS26230 0.51 -1.0 1,242,300 + RR42_RS26230 0.51 -0.0 1,242,300 + RR42_RS26230 0.51 -1.0 1,242,300 + RR42_RS26230 0.51 -1.1 1,242,300 + RR42_RS26230 0.51 +0.1 1,242,300 + RR42_RS26230 0.51 -0.6 1,242,300 + RR42_RS26230 0.51 -0.2 1,242,301 - RR42_RS26230 0.51 +0.4 1,242,301 - RR42_RS26230 0.51 +0.9 1,242,301 - RR42_RS26230 0.51 -0.5 1,242,301 - RR42_RS26230 0.51 -0.2 1,242,456 + RR42_RS26230 0.64 -1.2 1,242,457 - RR42_RS26230 0.64 -0.2 1,242,539 + RR42_RS26230 0.70 -1.3 1,242,539 + RR42_RS26230 0.70 -0.3 1,242,540 - RR42_RS26230 0.70 +0.5 1,242,577 + RR42_RS26230 0.73 -1.2
Or see this region's nucleotide sequence