Experiment: R2A with nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24740 and RR42_RS24745 are separated by 99 nucleotides RR42_RS24745 and RR42_RS24750 are separated by 251 nucleotides RR42_RS24750 and RR42_RS24755 are separated by 140 nucleotides
RR42_RS24740: RR42_RS24740 - hydrolase, at 887,872 to 888,567
_RS24740
RR42_RS24745: RR42_RS24745 - hypothetical protein, at 888,667 to 889,308
_RS24745
RR42_RS24750: RR42_RS24750 - LysR family transcriptional regulator, at 889,560 to 889,904
_RS24750
RR42_RS24755: RR42_RS24755 - ATP synthase subunit beta, at 890,045 to 893,467
_RS24755
Position (kb) 889
890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.573 kb on + strand at 888.573 kb on + strand at 888.574 kb on - strand at 888.574 kb on - strand at 888.574 kb on - strand at 888.636 kb on - strand at 888.636 kb on - strand at 888.636 kb on - strand at 888.636 kb on - strand at 888.663 kb on - strand at 888.755 kb on + strand, within RR42_RS24745 at 888.756 kb on - strand, within RR42_RS24745 at 888.756 kb on - strand, within RR42_RS24745 at 888.756 kb on - strand, within RR42_RS24745 at 888.895 kb on + strand, within RR42_RS24745 at 888.908 kb on + strand, within RR42_RS24745 at 888.909 kb on - strand, within RR42_RS24745 at 889.024 kb on - strand, within RR42_RS24745 at 889.134 kb on - strand, within RR42_RS24745 at 889.137 kb on - strand, within RR42_RS24745 at 889.137 kb on - strand, within RR42_RS24745 at 889.137 kb on - strand, within RR42_RS24745 at 889.169 kb on + strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.366 kb on - strand at 889.373 kb on + strand at 889.373 kb on + strand at 889.446 kb on + strand at 889.446 kb on + strand at 889.447 kb on - strand at 889.459 kb on + strand at 889.470 kb on + strand at 889.521 kb on + strand at 889.521 kb on + strand at 889.521 kb on + strand at 889.521 kb on + strand at 889.572 kb on + strand at 889.572 kb on + strand at 889.572 kb on + strand at 889.572 kb on + strand at 889.573 kb on - strand at 889.650 kb on + strand, within RR42_RS24750 at 889.715 kb on - strand, within RR42_RS24750 at 889.715 kb on - strand, within RR42_RS24750 at 889.792 kb on - strand, within RR42_RS24750 at 889.847 kb on - strand, within RR42_RS24750 at 889.847 kb on - strand, within RR42_RS24750 at 889.936 kb on + strand at 890.007 kb on - strand at 890.007 kb on - strand at 890.056 kb on + strand at 890.057 kb on - strand at 890.057 kb on - strand at 890.226 kb on + strand at 890.243 kb on + strand at 890.244 kb on - strand at 890.343 kb on + strand at 890.454 kb on - strand, within RR42_RS24755 at 890.454 kb on - strand, within RR42_RS24755 at 890.463 kb on - strand, within RR42_RS24755 at 890.463 kb on - strand, within RR42_RS24755 at 890.642 kb on - strand, within RR42_RS24755 at 890.759 kb on - strand, within RR42_RS24755 at 890.759 kb on - strand, within RR42_RS24755 at 890.861 kb on + strand, within RR42_RS24755 at 890.861 kb on + strand, within RR42_RS24755 at 890.861 kb on + strand, within RR42_RS24755 at 890.862 kb on - strand, within RR42_RS24755 at 890.862 kb on - strand, within RR42_RS24755 at 890.862 kb on - strand, within RR42_RS24755
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM remove 888,573 + +0.3 888,573 + -0.4 888,574 - -0.8 888,574 - -0.4 888,574 - +0.6 888,636 - -0.4 888,636 - +1.5 888,636 - +1.1 888,636 - -1.2 888,663 - -0.6 888,755 + RR42_RS24745 0.14 +0.0 888,756 - RR42_RS24745 0.14 +0.9 888,756 - RR42_RS24745 0.14 +0.0 888,756 - RR42_RS24745 0.14 +0.7 888,895 + RR42_RS24745 0.36 -0.2 888,908 + RR42_RS24745 0.38 +0.5 888,909 - RR42_RS24745 0.38 -1.8 889,024 - RR42_RS24745 0.56 +2.1 889,134 - RR42_RS24745 0.73 +0.5 889,137 - RR42_RS24745 0.73 -1.1 889,137 - RR42_RS24745 0.73 -0.5 889,137 - RR42_RS24745 0.73 +0.8 889,169 + RR42_RS24745 0.78 +0.2 889,170 - RR42_RS24745 0.78 -0.6 889,170 - RR42_RS24745 0.78 +0.9 889,170 - RR42_RS24745 0.78 +0.9 889,170 - RR42_RS24745 0.78 -0.1 889,366 - +2.4 889,373 + +0.7 889,373 + -0.1 889,446 + +0.5 889,446 + -0.8 889,447 - +0.3 889,459 + -0.0 889,470 + -0.7 889,521 + -0.0 889,521 + -0.5 889,521 + -1.0 889,521 + -0.3 889,572 + +0.1 889,572 + +0.5 889,572 + -0.4 889,572 + -0.8 889,573 - +0.6 889,650 + RR42_RS24750 0.26 -1.7 889,715 - RR42_RS24750 0.45 +0.4 889,715 - RR42_RS24750 0.45 +1.2 889,792 - RR42_RS24750 0.67 -1.4 889,847 - RR42_RS24750 0.83 -0.2 889,847 - RR42_RS24750 0.83 -0.1 889,936 + -0.2 890,007 - -0.3 890,007 - +0.9 890,056 + +0.5 890,057 - +0.2 890,057 - +0.5 890,226 + -0.4 890,243 + -0.3 890,244 - -1.4 890,343 + +0.2 890,454 - RR42_RS24755 0.12 +0.3 890,454 - RR42_RS24755 0.12 +0.3 890,463 - RR42_RS24755 0.12 -0.3 890,463 - RR42_RS24755 0.12 -1.1 890,642 - RR42_RS24755 0.17 +0.0 890,759 - RR42_RS24755 0.21 -0.0 890,759 - RR42_RS24755 0.21 +0.4 890,861 + RR42_RS24755 0.24 -0.2 890,861 + RR42_RS24755 0.24 -2.0 890,861 + RR42_RS24755 0.24 +1.3 890,862 - RR42_RS24755 0.24 -2.5 890,862 - RR42_RS24755 0.24 -0.7 890,862 - RR42_RS24755 0.24 +0.5
Or see this region's nucleotide sequence