Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23080

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23075 and RR42_RS23080 are separated by 204 nucleotidesRR42_RS23080 and RR42_RS23085 are separated by 159 nucleotides RR42_RS23075: RR42_RS23075 - ABC transporter substrate-binding protein, at 511,486 to 512,451 _RS23075 RR42_RS23080: RR42_RS23080 - LysR family transcriptional regulator, at 512,656 to 513,591 _RS23080 RR42_RS23085: RR42_RS23085 - cytochrome C biogenesis protein CcdA, at 513,751 to 514,677 _RS23085 Position (kb) 512 513 514Strain fitness (log2 ratio) -2 -1 0 1at 511.694 kb on + strand, within RR42_RS23075at 511.695 kb on - strand, within RR42_RS23075at 511.821 kb on + strand, within RR42_RS23075at 511.821 kb on + strand, within RR42_RS23075at 511.822 kb on - strand, within RR42_RS23075at 511.907 kb on + strand, within RR42_RS23075at 511.908 kb on - strand, within RR42_RS23075at 511.908 kb on - strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.992 kb on + strand, within RR42_RS23075at 511.993 kb on - strand, within RR42_RS23075at 512.221 kb on - strand, within RR42_RS23075at 512.235 kb on + strand, within RR42_RS23075at 512.235 kb on + strand, within RR42_RS23075at 512.236 kb on - strand, within RR42_RS23075at 512.236 kb on - strand, within RR42_RS23075at 512.236 kb on - strand, within RR42_RS23075at 512.385 kb on - strandat 512.452 kb on + strandat 512.452 kb on + strandat 512.452 kb on + strandat 512.470 kb on + strandat 512.526 kb on + strandat 512.535 kb on + strandat 512.535 kb on + strandat 512.535 kb on + strandat 512.535 kb on + strandat 512.536 kb on - strandat 512.536 kb on - strandat 512.536 kb on - strandat 512.536 kb on - strandat 512.536 kb on - strandat 512.537 kb on + strandat 512.537 kb on + strandat 512.836 kb on + strand, within RR42_RS23080at 512.837 kb on - strand, within RR42_RS23080at 513.083 kb on + strand, within RR42_RS23080at 513.083 kb on + strand, within RR42_RS23080at 513.084 kb on - strand, within RR42_RS23080at 513.090 kb on - strand, within RR42_RS23080at 513.591 kb on + strandat 513.592 kb on - strandat 513.676 kb on - strandat 513.677 kb on + strandat 513.677 kb on + strandat 513.677 kb on + strandat 513.677 kb on + strandat 513.678 kb on - strandat 513.678 kb on - strandat 513.701 kb on + strandat 513.701 kb on + strandat 513.701 kb on + strandat 513.702 kb on - strandat 513.760 kb on - strandat 513.773 kb on - strandat 513.773 kb on - strandat 513.783 kb on - strandat 514.123 kb on + strand, within RR42_RS23085at 514.123 kb on + strand, within RR42_RS23085at 514.124 kb on - strand, within RR42_RS23085at 514.124 kb on - strand, within RR42_RS23085at 514.124 kb on - strand, within RR42_RS23085at 514.158 kb on + strand, within RR42_RS23085at 514.253 kb on - strand, within RR42_RS23085at 514.284 kb on - strand, within RR42_RS23085at 514.478 kb on - strand, within RR42_RS23085at 514.478 kb on - strand, within RR42_RS23085at 514.504 kb on + strand, within RR42_RS23085at 514.504 kb on + strand, within RR42_RS23085at 514.504 kb on + strand, within RR42_RS23085at 514.505 kb on - strand, within RR42_RS23085at 514.505 kb on - strand, within RR42_RS23085

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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511,694 + RR42_RS23075 0.22 +0.3
511,695 - RR42_RS23075 0.22 +0.9
511,821 + RR42_RS23075 0.35 +0.8
511,821 + RR42_RS23075 0.35 -0.0
511,822 - RR42_RS23075 0.35 +0.1
511,907 + RR42_RS23075 0.44 +0.1
511,908 - RR42_RS23075 0.44 +0.0
511,908 - RR42_RS23075 0.44 -0.7
511,992 + RR42_RS23075 0.52 +0.4
511,992 + RR42_RS23075 0.52 -0.5
511,992 + RR42_RS23075 0.52 -2.2
511,992 + RR42_RS23075 0.52 -0.4
511,993 - RR42_RS23075 0.52 -0.3
512,221 - RR42_RS23075 0.76 +1.7
512,235 + RR42_RS23075 0.78 +0.5
512,235 + RR42_RS23075 0.78 +1.3
512,236 - RR42_RS23075 0.78 +0.5
512,236 - RR42_RS23075 0.78 +0.2
512,236 - RR42_RS23075 0.78 +0.3
512,385 - -0.6
512,452 + -0.3
512,452 + -0.8
512,452 + -1.7
512,470 + +0.1
512,526 + -0.1
512,535 + +0.5
512,535 + +0.1
512,535 + +0.6
512,535 + +0.5
512,536 - +0.2
512,536 - +0.5
512,536 - +0.3
512,536 - +0.1
512,536 - -0.7
512,537 + -1.7
512,537 + +0.3
512,836 + RR42_RS23080 0.19 +0.2
512,837 - RR42_RS23080 0.19 -0.8
513,083 + RR42_RS23080 0.46 +0.2
513,083 + RR42_RS23080 0.46 -0.6
513,084 - RR42_RS23080 0.46 -0.2
513,090 - RR42_RS23080 0.46 -0.1
513,591 + +0.8
513,592 - -0.2
513,676 - -0.6
513,677 + -0.2
513,677 + -0.1
513,677 + -0.7
513,677 + +0.6
513,678 - -0.2
513,678 - -0.7
513,701 + -0.1
513,701 + +0.5
513,701 + +0.7
513,702 - +0.1
513,760 - -0.7
513,773 - -0.4
513,773 - +1.3
513,783 - -0.2
514,123 + RR42_RS23085 0.40 +1.1
514,123 + RR42_RS23085 0.40 -0.2
514,124 - RR42_RS23085 0.40 -0.5
514,124 - RR42_RS23085 0.40 +0.6
514,124 - RR42_RS23085 0.40 +0.1
514,158 + RR42_RS23085 0.44 -1.3
514,253 - RR42_RS23085 0.54 -0.2
514,284 - RR42_RS23085 0.57 -0.8
514,478 - RR42_RS23085 0.78 -0.5
514,478 - RR42_RS23085 0.78 -0.5
514,504 + RR42_RS23085 0.81 -0.3
514,504 + RR42_RS23085 0.81 +0.5
514,504 + RR42_RS23085 0.81 +0.6
514,505 - RR42_RS23085 0.81 -0.0
514,505 - RR42_RS23085 0.81 -0.9

Or see this region's nucleotide sequence