Experiment: R2A with nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08605 and RR42_RS08610 overlap by 4 nucleotides RR42_RS08610 and RR42_RS08615 overlap by 4 nucleotides RR42_RS08615 and RR42_RS08620 are separated by 2 nucleotides RR42_RS08620 and RR42_RS08625 are separated by 14 nucleotides RR42_RS08625 and RR42_RS08630 overlap by 1 nucleotides
RR42_RS08605: RR42_RS08605 - hypothetical protein, at 1,806,501 to 1,807,010
_RS08605
RR42_RS08610: RR42_RS08610 - peptidoglycan-binding protein, at 1,807,007 to 1,807,813
_RS08610
RR42_RS08615: RR42_RS08615 - membrane protein, at 1,807,810 to 1,808,115
_RS08615
RR42_RS08620: RR42_RS08620 - membrane protein, at 1,808,118 to 1,808,507
_RS08620
RR42_RS08625: RR42_RS08625 - tail protein X, at 1,808,522 to 1,808,725
_RS08625
RR42_RS08630: RR42_RS08630 - head completion/stabilization protein, at 1,808,725 to 1,809,192
_RS08630
Position (kb) 1807
1808
1809 Strain fitness (log2 ratio) -1
0
1 at 1806.873 kb on + strand, within RR42_RS08605 at 1806.926 kb on - strand, within RR42_RS08605 at 1807.011 kb on - strand at 1807.044 kb on + strand at 1807.068 kb on + strand at 1807.084 kb on - strand at 1807.098 kb on + strand, within RR42_RS08610 at 1807.098 kb on + strand, within RR42_RS08610 at 1807.099 kb on - strand, within RR42_RS08610 at 1807.146 kb on - strand, within RR42_RS08610 at 1807.146 kb on - strand, within RR42_RS08610 at 1807.222 kb on - strand, within RR42_RS08610 at 1807.222 kb on - strand, within RR42_RS08610 at 1807.239 kb on + strand, within RR42_RS08610 at 1807.240 kb on - strand, within RR42_RS08610 at 1807.340 kb on + strand, within RR42_RS08610 at 1807.341 kb on - strand, within RR42_RS08610 at 1807.341 kb on - strand, within RR42_RS08610 at 1807.341 kb on - strand, within RR42_RS08610 at 1807.366 kb on - strand, within RR42_RS08610 at 1807.389 kb on - strand, within RR42_RS08610 at 1807.449 kb on + strand, within RR42_RS08610 at 1807.556 kb on + strand, within RR42_RS08610 at 1807.899 kb on - strand, within RR42_RS08615 at 1807.899 kb on - strand, within RR42_RS08615 at 1808.250 kb on + strand, within RR42_RS08620 at 1808.250 kb on + strand, within RR42_RS08620 at 1808.250 kb on + strand, within RR42_RS08620 at 1808.288 kb on - strand, within RR42_RS08620 at 1808.671 kb on - strand, within RR42_RS08625 at 1808.818 kb on + strand, within RR42_RS08630 at 1808.897 kb on + strand, within RR42_RS08630 at 1808.987 kb on + strand, within RR42_RS08630
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM remove 1,806,873 + RR42_RS08605 0.73 -0.0 1,806,926 - RR42_RS08605 0.83 -0.6 1,807,011 - -0.4 1,807,044 + +0.0 1,807,068 + -0.3 1,807,084 - +0.3 1,807,098 + RR42_RS08610 0.11 +0.3 1,807,098 + RR42_RS08610 0.11 -1.2 1,807,099 - RR42_RS08610 0.11 -0.5 1,807,146 - RR42_RS08610 0.17 -0.8 1,807,146 - RR42_RS08610 0.17 +0.2 1,807,222 - RR42_RS08610 0.27 -1.2 1,807,222 - RR42_RS08610 0.27 -0.3 1,807,239 + RR42_RS08610 0.29 +0.7 1,807,240 - RR42_RS08610 0.29 -1.0 1,807,340 + RR42_RS08610 0.41 -0.0 1,807,341 - RR42_RS08610 0.41 -0.1 1,807,341 - RR42_RS08610 0.41 +0.2 1,807,341 - RR42_RS08610 0.41 -1.6 1,807,366 - RR42_RS08610 0.44 +0.2 1,807,389 - RR42_RS08610 0.47 -0.0 1,807,449 + RR42_RS08610 0.55 -0.2 1,807,556 + RR42_RS08610 0.68 +0.7 1,807,899 - RR42_RS08615 0.29 -0.4 1,807,899 - RR42_RS08615 0.29 -0.6 1,808,250 + RR42_RS08620 0.34 +0.5 1,808,250 + RR42_RS08620 0.34 -0.2 1,808,250 + RR42_RS08620 0.34 +0.2 1,808,288 - RR42_RS08620 0.44 -0.0 1,808,671 - RR42_RS08625 0.73 -1.2 1,808,818 + RR42_RS08630 0.20 -0.3 1,808,897 + RR42_RS08630 0.37 -1.0 1,808,987 + RR42_RS08630 0.56 -0.0
Or see this region's nucleotide sequence