Experiment: R2A with nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07580 and RR42_RS07585 are separated by 105 nucleotides RR42_RS07585 and RR42_RS07590 are separated by 16 nucleotides
RR42_RS07580: RR42_RS07580 - helicase, at 1,622,488 to 1,624,692
_RS07580
RR42_RS07585: RR42_RS07585 - competence protein ComL, at 1,624,798 to 1,625,628
_RS07585
RR42_RS07590: RR42_RS07590 - pseudouridine synthase, at 1,625,645 to 1,626,862
_RS07590
Position (kb) 1624
1625
1626 Strain fitness (log2 ratio) -1
0
1
2 at 1623.910 kb on - strand, within RR42_RS07580 at 1623.910 kb on - strand, within RR42_RS07580 at 1623.910 kb on - strand, within RR42_RS07580 at 1623.914 kb on + strand, within RR42_RS07580 at 1623.915 kb on - strand, within RR42_RS07580 at 1623.940 kb on + strand, within RR42_RS07580 at 1623.940 kb on + strand, within RR42_RS07580 at 1623.940 kb on + strand, within RR42_RS07580 at 1623.941 kb on - strand, within RR42_RS07580 at 1623.941 kb on - strand, within RR42_RS07580 at 1623.941 kb on - strand, within RR42_RS07580 at 1624.001 kb on - strand, within RR42_RS07580 at 1624.021 kb on + strand, within RR42_RS07580 at 1624.171 kb on + strand, within RR42_RS07580 at 1624.171 kb on + strand, within RR42_RS07580 at 1624.172 kb on - strand, within RR42_RS07580 at 1624.172 kb on - strand, within RR42_RS07580 at 1624.172 kb on - strand, within RR42_RS07580 at 1624.339 kb on - strand, within RR42_RS07580 at 1624.527 kb on + strand at 1624.550 kb on - strand at 1624.841 kb on + strand at 1624.850 kb on + strand at 1624.850 kb on + strand at 1624.851 kb on - strand at 1624.851 kb on - strand at 1625.667 kb on - strand at 1625.785 kb on - strand, within RR42_RS07590 at 1626.083 kb on + strand, within RR42_RS07590 at 1626.083 kb on + strand, within RR42_RS07590 at 1626.083 kb on + strand, within RR42_RS07590 at 1626.084 kb on - strand, within RR42_RS07590 at 1626.169 kb on - strand, within RR42_RS07590 at 1626.332 kb on + strand, within RR42_RS07590 at 1626.333 kb on - strand, within RR42_RS07590 at 1626.466 kb on + strand, within RR42_RS07590 at 1626.596 kb on + strand, within RR42_RS07590 at 1626.597 kb on - strand, within RR42_RS07590
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM remove 1,623,910 - RR42_RS07580 0.64 +0.4 1,623,910 - RR42_RS07580 0.64 +0.1 1,623,910 - RR42_RS07580 0.64 -0.2 1,623,914 + RR42_RS07580 0.65 -0.2 1,623,915 - RR42_RS07580 0.65 +0.8 1,623,940 + RR42_RS07580 0.66 -0.5 1,623,940 + RR42_RS07580 0.66 +0.0 1,623,940 + RR42_RS07580 0.66 -0.9 1,623,941 - RR42_RS07580 0.66 -0.2 1,623,941 - RR42_RS07580 0.66 -0.5 1,623,941 - RR42_RS07580 0.66 -0.3 1,624,001 - RR42_RS07580 0.69 -0.2 1,624,021 + RR42_RS07580 0.70 +0.4 1,624,171 + RR42_RS07580 0.76 +0.1 1,624,171 + RR42_RS07580 0.76 -1.5 1,624,172 - RR42_RS07580 0.76 +0.6 1,624,172 - RR42_RS07580 0.76 +0.4 1,624,172 - RR42_RS07580 0.76 +0.1 1,624,339 - RR42_RS07580 0.84 +0.7 1,624,527 + +0.4 1,624,550 - +0.3 1,624,841 + -1.4 1,624,850 + -0.8 1,624,850 + -0.5 1,624,851 - -0.7 1,624,851 - -0.9 1,625,667 - +1.5 1,625,785 - RR42_RS07590 0.11 +1.6 1,626,083 + RR42_RS07590 0.36 +1.4 1,626,083 + RR42_RS07590 0.36 +0.7 1,626,083 + RR42_RS07590 0.36 -0.2 1,626,084 - RR42_RS07590 0.36 +0.4 1,626,169 - RR42_RS07590 0.43 +1.0 1,626,332 + RR42_RS07590 0.56 +0.6 1,626,333 - RR42_RS07590 0.56 +0.9 1,626,466 + RR42_RS07590 0.67 +1.3 1,626,596 + RR42_RS07590 0.78 +1.6 1,626,597 - RR42_RS07590 0.78 +1.9
Or see this region's nucleotide sequence