Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05785

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05775 and RR42_RS05780 are separated by 39 nucleotidesRR42_RS05780 and RR42_RS05785 are separated by 99 nucleotidesRR42_RS05785 and RR42_RS05790 are separated by 82 nucleotides RR42_RS05775: RR42_RS05775 - hypothetical protein, at 1,270,808 to 1,271,317 _RS05775 RR42_RS05780: RR42_RS05780 - hypothetical protein, at 1,271,357 to 1,272,142 _RS05780 RR42_RS05785: RR42_RS05785 - hypothetical protein, at 1,272,242 to 1,273,384 _RS05785 RR42_RS05790: RR42_RS05790 - lipoprotein, at 1,273,467 to 1,274,243 _RS05790 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -3 -2 -1 0 1at 1271.294 kb on + strandat 1271.294 kb on + strandat 1271.323 kb on - strandat 1271.393 kb on + strandat 1271.394 kb on - strandat 1271.423 kb on - strandat 1271.423 kb on - strandat 1271.618 kb on + strand, within RR42_RS05780at 1271.619 kb on - strand, within RR42_RS05780at 1271.786 kb on + strand, within RR42_RS05780at 1271.888 kb on + strand, within RR42_RS05780at 1271.889 kb on - strand, within RR42_RS05780at 1271.889 kb on - strand, within RR42_RS05780at 1272.018 kb on - strand, within RR42_RS05780at 1272.157 kb on - strandat 1272.164 kb on - strandat 1272.259 kb on + strandat 1272.259 kb on + strandat 1272.260 kb on - strandat 1272.479 kb on + strand, within RR42_RS05785at 1272.479 kb on + strand, within RR42_RS05785at 1272.479 kb on + strand, within RR42_RS05785at 1272.479 kb on + strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.480 kb on - strand, within RR42_RS05785at 1272.575 kb on + strand, within RR42_RS05785at 1272.576 kb on - strand, within RR42_RS05785at 1272.868 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.986 kb on + strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.987 kb on - strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1272.989 kb on + strand, within RR42_RS05785at 1273.061 kb on + strand, within RR42_RS05785at 1273.063 kb on + strand, within RR42_RS05785at 1273.064 kb on - strand, within RR42_RS05785at 1273.182 kb on - strand, within RR42_RS05785at 1273.196 kb on + strand, within RR42_RS05785at 1273.196 kb on + strand, within RR42_RS05785at 1273.196 kb on + strand, within RR42_RS05785at 1273.196 kb on + strand, within RR42_RS05785at 1273.197 kb on - strand, within RR42_RS05785at 1273.197 kb on - strand, within RR42_RS05785at 1273.197 kb on - strand, within RR42_RS05785at 1273.229 kb on + strand, within RR42_RS05785at 1273.230 kb on - strand, within RR42_RS05785at 1273.230 kb on - strand, within RR42_RS05785at 1273.230 kb on - strand, within RR42_RS05785at 1273.729 kb on + strand, within RR42_RS05790at 1273.730 kb on - strand, within RR42_RS05790at 1273.753 kb on + strand, within RR42_RS05790at 1273.936 kb on + strand, within RR42_RS05790at 1273.937 kb on - strand, within RR42_RS05790at 1273.937 kb on - strand, within RR42_RS05790at 1273.937 kb on - strand, within RR42_RS05790at 1274.324 kb on - strandat 1274.350 kb on + strandat 1274.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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1,271,294 + -0.4
1,271,294 + -0.0
1,271,323 - -1.7
1,271,393 + -0.1
1,271,394 - -0.8
1,271,423 - +0.6
1,271,423 - -1.6
1,271,618 + RR42_RS05780 0.33 +0.4
1,271,619 - RR42_RS05780 0.33 -0.8
1,271,786 + RR42_RS05780 0.55 +0.9
1,271,888 + RR42_RS05780 0.68 -2.2
1,271,889 - RR42_RS05780 0.68 +0.1
1,271,889 - RR42_RS05780 0.68 -0.5
1,272,018 - RR42_RS05780 0.84 +0.6
1,272,157 - -0.9
1,272,164 - +0.3
1,272,259 + +0.5
1,272,259 + -2.9
1,272,260 - +1.4
1,272,479 + RR42_RS05785 0.21 -0.4
1,272,479 + RR42_RS05785 0.21 -0.2
1,272,479 + RR42_RS05785 0.21 -2.7
1,272,479 + RR42_RS05785 0.21 -0.1
1,272,480 - RR42_RS05785 0.21 +0.1
1,272,480 - RR42_RS05785 0.21 -0.3
1,272,480 - RR42_RS05785 0.21 +0.1
1,272,480 - RR42_RS05785 0.21 -1.7
1,272,480 - RR42_RS05785 0.21 -0.3
1,272,575 + RR42_RS05785 0.29 -0.0
1,272,576 - RR42_RS05785 0.29 -0.0
1,272,868 + RR42_RS05785 0.55 +0.0
1,272,986 + RR42_RS05785 0.65 +0.4
1,272,986 + RR42_RS05785 0.65 +1.0
1,272,986 + RR42_RS05785 0.65 +0.0
1,272,986 + RR42_RS05785 0.65 -0.2
1,272,987 - RR42_RS05785 0.65 +0.4
1,272,987 - RR42_RS05785 0.65 -0.4
1,272,987 - RR42_RS05785 0.65 -1.8
1,272,987 - RR42_RS05785 0.65 -1.1
1,272,989 + RR42_RS05785 0.65 +0.1
1,272,989 + RR42_RS05785 0.65 -0.1
1,272,989 + RR42_RS05785 0.65 -0.5
1,272,989 + RR42_RS05785 0.65 +0.3
1,272,989 + RR42_RS05785 0.65 -0.9
1,272,989 + RR42_RS05785 0.65 +0.2
1,273,061 + RR42_RS05785 0.72 -2.3
1,273,063 + RR42_RS05785 0.72 +0.0
1,273,064 - RR42_RS05785 0.72 +1.0
1,273,182 - RR42_RS05785 0.82 -0.3
1,273,196 + RR42_RS05785 0.83 -0.6
1,273,196 + RR42_RS05785 0.83 +0.3
1,273,196 + RR42_RS05785 0.83 -0.7
1,273,196 + RR42_RS05785 0.83 -0.4
1,273,197 - RR42_RS05785 0.84 +0.4
1,273,197 - RR42_RS05785 0.84 -0.1
1,273,197 - RR42_RS05785 0.84 -0.0
1,273,229 + RR42_RS05785 0.86 -0.0
1,273,230 - RR42_RS05785 0.86 -0.2
1,273,230 - RR42_RS05785 0.86 -0.1
1,273,230 - RR42_RS05785 0.86 +0.1
1,273,729 + RR42_RS05790 0.34 +0.2
1,273,730 - RR42_RS05790 0.34 -0.4
1,273,753 + RR42_RS05790 0.37 -1.0
1,273,936 + RR42_RS05790 0.60 -0.3
1,273,937 - RR42_RS05790 0.60 -1.2
1,273,937 - RR42_RS05790 0.60 -0.9
1,273,937 - RR42_RS05790 0.60 -0.6
1,274,324 - +0.5
1,274,350 + -0.4
1,274,351 - -2.0

Or see this region's nucleotide sequence