Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04235

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04230 and RR42_RS04235 are separated by 788 nucleotidesRR42_RS04235 and RR42_RS04240 are separated by 215 nucleotidesRR42_RS04240 and RR42_RS04245 are separated by 446 nucleotides RR42_RS04230: RR42_RS04230 - dihydrodipicolinate synthase, at 935,729 to 936,637 _RS04230 RR42_RS04235: RR42_RS04235 - glutamate-1-semialdehyde aminotransferase, at 937,426 to 938,715 _RS04235 RR42_RS04240: RR42_RS04240 - rubredoxin, at 938,931 to 939,101 _RS04240 RR42_RS04245: RR42_RS04245 - chemotaxis protein CheY, at 939,548 to 940,042 _RS04245 Position (kb) 937 938 939Strain fitness (log2 ratio) -1 0 1at 936.645 kb on - strandat 936.645 kb on - strandat 936.691 kb on + strandat 936.691 kb on + strandat 936.707 kb on + strandat 936.707 kb on + strandat 936.708 kb on - strandat 936.708 kb on - strandat 936.708 kb on - strandat 936.725 kb on + strandat 936.725 kb on + strandat 936.725 kb on + strandat 936.726 kb on - strandat 936.776 kb on - strandat 936.776 kb on - strandat 936.776 kb on - strandat 936.776 kb on - strandat 937.042 kb on + strandat 937.371 kb on - strandat 938.769 kb on - strandat 939.438 kb on - strandat 939.564 kb on + strandat 939.565 kb on - strandat 939.565 kb on - strandat 939.565 kb on - strandat 939.565 kb on - strandat 939.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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936,645 - -0.1
936,645 - +0.0
936,691 + -0.1
936,691 + -1.1
936,707 + +0.6
936,707 + -0.1
936,708 - +0.4
936,708 - -1.6
936,708 - -0.1
936,725 + -0.0
936,725 + +0.4
936,725 + -0.8
936,726 - +0.1
936,776 - +0.1
936,776 - +0.3
936,776 - +0.6
936,776 - +0.1
937,042 + -0.3
937,371 - +0.3
938,769 - -0.4
939,438 - +0.5
939,564 + -0.1
939,565 - +1.3
939,565 - +0.6
939,565 - +0.2
939,565 - +0.0
939,575 - -0.6

Or see this region's nucleotide sequence