Experiment: R2A with nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02990 and RR42_RS02995 are separated by 828 nucleotides RR42_RS02995 and RR42_RS03000 are separated by 83 nucleotides
RR42_RS02990: RR42_RS02990 - hypothetical protein, at 662,559 to 662,762
_RS02990
RR42_RS02995: RR42_RS02995 - LysR family transcriptional regulator, at 663,591 to 664,505
_RS02995
RR42_RS03000: RR42_RS03000 - ABC transporter substrate-binding protein, at 664,589 to 665,557
_RS03000
Position (kb) 663
664
665 Strain fitness (log2 ratio) -2
-1
0
1 at 662.617 kb on + strand, within RR42_RS02990 at 662.617 kb on + strand, within RR42_RS02990 at 662.617 kb on + strand, within RR42_RS02990 at 662.618 kb on - strand, within RR42_RS02990 at 662.621 kb on + strand, within RR42_RS02990 at 662.622 kb on - strand, within RR42_RS02990 at 662.684 kb on + strand, within RR42_RS02990 at 662.710 kb on + strand, within RR42_RS02990 at 662.916 kb on + strand at 662.917 kb on - strand at 663.045 kb on + strand at 663.066 kb on + strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.130 kb on + strand at 663.130 kb on + strand at 663.131 kb on - strand at 663.223 kb on + strand at 663.223 kb on + strand at 663.224 kb on - strand at 663.224 kb on - strand at 663.255 kb on + strand at 663.263 kb on + strand at 663.358 kb on - strand at 663.358 kb on - strand at 663.430 kb on + strand at 663.431 kb on - strand at 663.431 kb on - strand at 663.437 kb on + strand at 663.593 kb on - strand at 663.701 kb on - strand, within RR42_RS02995 at 663.773 kb on - strand, within RR42_RS02995 at 663.881 kb on - strand, within RR42_RS02995 at 663.985 kb on + strand, within RR42_RS02995 at 663.985 kb on + strand, within RR42_RS02995 at 664.122 kb on + strand, within RR42_RS02995 at 664.122 kb on + strand, within RR42_RS02995 at 664.446 kb on - strand at 664.446 kb on - strand at 664.447 kb on + strand at 664.448 kb on - strand at 664.448 kb on - strand at 664.799 kb on + strand, within RR42_RS03000 at 665.097 kb on + strand, within RR42_RS03000 at 665.097 kb on + strand, within RR42_RS03000 at 665.098 kb on - strand, within RR42_RS03000 at 665.232 kb on + strand, within RR42_RS03000 at 665.247 kb on + strand, within RR42_RS03000 at 665.256 kb on + strand, within RR42_RS03000 at 665.256 kb on + strand, within RR42_RS03000 at 665.256 kb on + strand, within RR42_RS03000 at 665.257 kb on - strand, within RR42_RS03000 at 665.257 kb on - strand, within RR42_RS03000 at 665.298 kb on + strand, within RR42_RS03000 at 665.299 kb on - strand, within RR42_RS03000
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM remove 662,617 + RR42_RS02990 0.28 +0.6 662,617 + RR42_RS02990 0.28 -0.6 662,617 + RR42_RS02990 0.28 -0.4 662,618 - RR42_RS02990 0.29 +1.4 662,621 + RR42_RS02990 0.30 +0.5 662,622 - RR42_RS02990 0.31 +0.2 662,684 + RR42_RS02990 0.61 +0.4 662,710 + RR42_RS02990 0.74 +0.0 662,916 + +0.5 662,917 - +0.0 663,045 + +0.1 663,066 + +0.4 663,067 - -1.2 663,067 - -0.5 663,067 - -1.2 663,067 - -0.2 663,067 - +0.2 663,067 - +0.4 663,130 + +0.4 663,130 + -0.9 663,131 - +0.0 663,223 + -0.3 663,223 + +0.4 663,224 - +0.1 663,224 - +0.5 663,255 + -0.8 663,263 + -1.3 663,358 - +0.3 663,358 - -0.0 663,430 + +0.0 663,431 - +0.7 663,431 - -0.4 663,437 + -0.8 663,593 - +0.1 663,701 - RR42_RS02995 0.12 +1.1 663,773 - RR42_RS02995 0.20 -0.1 663,881 - RR42_RS02995 0.32 +0.1 663,985 + RR42_RS02995 0.43 +0.2 663,985 + RR42_RS02995 0.43 +0.7 664,122 + RR42_RS02995 0.58 -0.5 664,122 + RR42_RS02995 0.58 +1.3 664,446 - -0.5 664,446 - -0.1 664,447 + +0.2 664,448 - -1.1 664,448 - +0.5 664,799 + RR42_RS03000 0.22 -0.3 665,097 + RR42_RS03000 0.52 +0.6 665,097 + RR42_RS03000 0.52 -0.8 665,098 - RR42_RS03000 0.53 +0.2 665,232 + RR42_RS03000 0.66 -0.3 665,247 + RR42_RS03000 0.68 -0.4 665,256 + RR42_RS03000 0.69 -0.6 665,256 + RR42_RS03000 0.69 +1.7 665,256 + RR42_RS03000 0.69 -2.3 665,257 - RR42_RS03000 0.69 -0.5 665,257 - RR42_RS03000 0.69 +0.2 665,298 + RR42_RS03000 0.73 -0.5 665,299 - RR42_RS03000 0.73 +0.0
Or see this region's nucleotide sequence