Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00840

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00830 and RR42_RS00835 are separated by 91 nucleotidesRR42_RS00835 and RR42_RS00840 are separated by 168 nucleotidesRR42_RS00840 and RR42_RS00845 overlap by 4 nucleotidesRR42_RS00845 and RR42_RS00850 overlap by 4 nucleotides RR42_RS00830: RR42_RS00830 - cell division protein FtsN, at 203,416 to 204,192 _RS00830 RR42_RS00835: RR42_RS00835 - DSBA oxidoreductase, at 204,284 to 204,922 _RS00835 RR42_RS00840: RR42_RS00840 - short-chain dehydrogenase, at 205,091 to 205,903 _RS00840 RR42_RS00845: RR42_RS00845 - metal ABC transporter substrate-binding protein, at 205,900 to 206,736 _RS00845 RR42_RS00850: RR42_RS00850 - hypothetical protein, at 206,733 to 206,993 _RS00850 Position (kb) 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 204.180 kb on + strandat 204.181 kb on - strandat 204.191 kb on - strandat 204.191 kb on - strandat 204.200 kb on + strandat 204.250 kb on + strandat 204.250 kb on + strandat 204.251 kb on - strandat 204.251 kb on - strandat 204.251 kb on - strandat 204.251 kb on - strandat 204.251 kb on - strandat 204.251 kb on - strandat 204.251 kb on - strandat 204.251 kb on - strandat 204.384 kb on - strand, within RR42_RS00835at 204.450 kb on - strand, within RR42_RS00835at 204.731 kb on + strand, within RR42_RS00835at 204.731 kb on + strand, within RR42_RS00835at 204.731 kb on + strand, within RR42_RS00835at 204.732 kb on - strand, within RR42_RS00835at 204.732 kb on - strand, within RR42_RS00835at 204.732 kb on - strand, within RR42_RS00835at 204.732 kb on - strand, within RR42_RS00835at 204.732 kb on - strand, within RR42_RS00835at 204.732 kb on - strand, within RR42_RS00835at 204.732 kb on - strand, within RR42_RS00835at 204.732 kb on - strand, within RR42_RS00835at 204.788 kb on + strand, within RR42_RS00835at 204.789 kb on - strand, within RR42_RS00835at 204.789 kb on - strand, within RR42_RS00835at 204.789 kb on - strand, within RR42_RS00835at 204.830 kb on + strand, within RR42_RS00835at 204.830 kb on + strand, within RR42_RS00835at 204.831 kb on - strand, within RR42_RS00835at 204.831 kb on - strand, within RR42_RS00835at 204.831 kb on - strand, within RR42_RS00835at 204.831 kb on - strand, within RR42_RS00835at 204.831 kb on - strand, within RR42_RS00835at 204.831 kb on - strand, within RR42_RS00835at 204.921 kb on - strandat 204.921 kb on - strandat 205.157 kb on + strandat 205.158 kb on - strandat 205.562 kb on + strand, within RR42_RS00840at 205.563 kb on - strand, within RR42_RS00840at 205.832 kb on + strandat 206.135 kb on + strand, within RR42_RS00845at 206.327 kb on + strand, within RR42_RS00845at 206.327 kb on + strand, within RR42_RS00845at 206.327 kb on + strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.328 kb on - strand, within RR42_RS00845at 206.362 kb on + strand, within RR42_RS00845at 206.362 kb on + strand, within RR42_RS00845at 206.362 kb on + strand, within RR42_RS00845at 206.362 kb on + strand, within RR42_RS00845at 206.363 kb on - strand, within RR42_RS00845at 206.363 kb on - strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.407 kb on + strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.408 kb on - strand, within RR42_RS00845at 206.409 kb on + strand, within RR42_RS00845at 206.410 kb on - strand, within RR42_RS00845at 206.506 kb on - strand, within RR42_RS00845at 206.544 kb on + strand, within RR42_RS00845at 206.544 kb on + strand, within RR42_RS00845at 206.590 kb on + strand, within RR42_RS00845at 206.707 kb on + strandat 206.707 kb on + strandat 206.707 kb on + strandat 206.708 kb on - strandat 206.708 kb on - strandat 206.708 kb on - strandat 206.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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204,180 + +1.0
204,181 - +0.1
204,191 - +0.6
204,191 - +1.8
204,200 + -0.6
204,250 + -0.6
204,250 + +0.5
204,251 - +0.1
204,251 - -0.6
204,251 - -0.2
204,251 - -0.1
204,251 - +0.6
204,251 - +0.8
204,251 - +0.0
204,251 - -0.1
204,384 - RR42_RS00835 0.16 -0.2
204,450 - RR42_RS00835 0.26 +0.0
204,731 + RR42_RS00835 0.70 +0.5
204,731 + RR42_RS00835 0.70 +1.1
204,731 + RR42_RS00835 0.70 +0.1
204,732 - RR42_RS00835 0.70 -0.6
204,732 - RR42_RS00835 0.70 -0.3
204,732 - RR42_RS00835 0.70 -0.3
204,732 - RR42_RS00835 0.70 -0.6
204,732 - RR42_RS00835 0.70 -0.5
204,732 - RR42_RS00835 0.70 +0.4
204,732 - RR42_RS00835 0.70 +0.9
204,732 - RR42_RS00835 0.70 -0.2
204,788 + RR42_RS00835 0.79 -0.3
204,789 - RR42_RS00835 0.79 -0.4
204,789 - RR42_RS00835 0.79 +1.4
204,789 - RR42_RS00835 0.79 -0.3
204,830 + RR42_RS00835 0.85 -0.6
204,830 + RR42_RS00835 0.85 -2.9
204,831 - RR42_RS00835 0.86 +0.3
204,831 - RR42_RS00835 0.86 +0.4
204,831 - RR42_RS00835 0.86 -0.3
204,831 - RR42_RS00835 0.86 -0.3
204,831 - RR42_RS00835 0.86 -1.8
204,831 - RR42_RS00835 0.86 -0.9
204,921 - +0.4
204,921 - -0.7
205,157 + +0.9
205,158 - +0.2
205,562 + RR42_RS00840 0.58 +0.0
205,563 - RR42_RS00840 0.58 +0.9
205,832 + -0.5
206,135 + RR42_RS00845 0.28 -0.3
206,327 + RR42_RS00845 0.51 +0.5
206,327 + RR42_RS00845 0.51 +0.0
206,327 + RR42_RS00845 0.51 +0.6
206,328 - RR42_RS00845 0.51 +0.1
206,328 - RR42_RS00845 0.51 -0.2
206,328 - RR42_RS00845 0.51 +0.5
206,328 - RR42_RS00845 0.51 +0.7
206,328 - RR42_RS00845 0.51 -0.2
206,328 - RR42_RS00845 0.51 +0.7
206,362 + RR42_RS00845 0.55 -0.3
206,362 + RR42_RS00845 0.55 -1.6
206,362 + RR42_RS00845 0.55 -0.3
206,362 + RR42_RS00845 0.55 -0.9
206,363 - RR42_RS00845 0.55 -1.1
206,363 - RR42_RS00845 0.55 -0.4
206,407 + RR42_RS00845 0.61 -0.1
206,407 + RR42_RS00845 0.61 +0.4
206,407 + RR42_RS00845 0.61 +1.3
206,407 + RR42_RS00845 0.61 -0.2
206,407 + RR42_RS00845 0.61 -0.1
206,407 + RR42_RS00845 0.61 +0.5
206,407 + RR42_RS00845 0.61 +0.4
206,407 + RR42_RS00845 0.61 +1.3
206,407 + RR42_RS00845 0.61 +0.2
206,408 - RR42_RS00845 0.61 +1.2
206,408 - RR42_RS00845 0.61 -0.0
206,408 - RR42_RS00845 0.61 +0.2
206,408 - RR42_RS00845 0.61 +0.1
206,408 - RR42_RS00845 0.61 -0.1
206,408 - RR42_RS00845 0.61 +0.3
206,408 - RR42_RS00845 0.61 -0.1
206,408 - RR42_RS00845 0.61 +0.1
206,409 + RR42_RS00845 0.61 +0.6
206,410 - RR42_RS00845 0.61 +0.0
206,506 - RR42_RS00845 0.72 -0.1
206,544 + RR42_RS00845 0.77 -1.2
206,544 + RR42_RS00845 0.77 +0.1
206,590 + RR42_RS00845 0.82 -0.1
206,707 + +0.1
206,707 + +0.6
206,707 + +0.5
206,708 - +0.3
206,708 - +0.1
206,708 - -0.4
206,734 + +0.1

Or see this region's nucleotide sequence