Experiment: R2A with nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00690 and RR42_RS00695 are separated by 159 nucleotides RR42_RS00695 and RR42_RS00700 overlap by 4 nucleotides RR42_RS00700 and RR42_RS00705 are separated by 57 nucleotides
RR42_RS00690: RR42_RS00690 - ABC transporter permease, at 175,540 to 176,661
_RS00690
RR42_RS00695: RR42_RS00695 - biotin--[acetyl-CoA-carboxylase] synthetase, at 176,821 to 177,705
_RS00695
RR42_RS00700: RR42_RS00700 - pantothenate kinase, at 177,702 to 178,544
_RS00700
RR42_RS00705: RR42_RS00705 - hypothetical protein, at 178,602 to 179,330
_RS00705
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 176.111 kb on + strand, within RR42_RS00690 at 176.169 kb on - strand, within RR42_RS00690 at 176.180 kb on + strand, within RR42_RS00690 at 176.181 kb on - strand, within RR42_RS00690 at 176.181 kb on - strand at 176.184 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.635 kb on + strand at 176.635 kb on + strand at 176.636 kb on - strand at 176.636 kb on - strand at 176.697 kb on - strand at 176.697 kb on - strand at 176.754 kb on + strand at 176.755 kb on - strand at 176.755 kb on - strand at 176.763 kb on + strand at 176.763 kb on + strand at 178.567 kb on + strand at 178.567 kb on + strand at 178.568 kb on - strand at 178.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM remove 176,111 + RR42_RS00690 0.51 -0.4 176,169 - RR42_RS00690 0.56 -0.4 176,180 + RR42_RS00690 0.57 +0.3 176,181 - RR42_RS00690 0.57 +0.7 176,181 - -0.1 176,184 + RR42_RS00690 0.57 +0.9 176,346 + RR42_RS00690 0.72 -1.1 176,346 + RR42_RS00690 0.72 -0.3 176,346 + RR42_RS00690 0.72 +1.1 176,346 + RR42_RS00690 0.72 -1.0 176,346 + RR42_RS00690 0.72 +0.2 176,346 + RR42_RS00690 0.72 -2.4 176,346 + RR42_RS00690 0.72 -0.1 176,346 + RR42_RS00690 0.72 +0.3 176,346 + RR42_RS00690 0.72 +0.9 176,346 + RR42_RS00690 0.72 +0.4 176,346 + RR42_RS00690 0.72 +0.9 176,346 + RR42_RS00690 0.72 +0.1 176,347 - RR42_RS00690 0.72 -0.2 176,347 - RR42_RS00690 0.72 -0.8 176,347 - RR42_RS00690 0.72 +0.1 176,347 - RR42_RS00690 0.72 -0.8 176,347 - RR42_RS00690 0.72 +0.4 176,347 - RR42_RS00690 0.72 +0.6 176,347 - RR42_RS00690 0.72 -1.2 176,347 - RR42_RS00690 0.72 -0.7 176,347 - RR42_RS00690 0.72 -0.2 176,347 - RR42_RS00690 0.72 +0.6 176,347 - RR42_RS00690 0.72 +1.1 176,347 - RR42_RS00690 0.72 +0.0 176,635 + +0.1 176,635 + +1.4 176,636 - +0.6 176,636 - +0.7 176,697 - -0.9 176,697 - -0.2 176,754 + -3.1 176,755 - -2.1 176,755 - -0.5 176,763 + +0.6 176,763 + +0.2 178,567 + +0.2 178,567 + +0.0 178,568 - +0.6 178,621 + -0.6
Or see this region's nucleotide sequence