Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_93 and Pf1N1B4_94 are separated by 23 nucleotides Pf1N1B4_94 and Pf1N1B4_95 are separated by 368 nucleotides
Pf1N1B4_93 - Phenazine biosynthesis protein PhzF like, at 98,071 to 98,913
_93
Pf1N1B4_94 - Glutathione S-transferase (EC 2.5.1.18), at 98,937 to 99,644
_94
Pf1N1B4_95 - contains type I hydrophobic transmembrane region and ATP/GTP binding motif, at 100,013 to 100,699
_95
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.084 kb on - strand at 98.094 kb on + strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.192 kb on + strand, within Pf1N1B4_93 at 98.192 kb on + strand, within Pf1N1B4_93 at 98.192 kb on + strand, within Pf1N1B4_93 at 98.193 kb on - strand, within Pf1N1B4_93 at 98.193 kb on - strand, within Pf1N1B4_93 at 98.193 kb on - strand, within Pf1N1B4_93 at 98.887 kb on + strand at 98.887 kb on + strand at 98.888 kb on - strand at 99.055 kb on + strand, within Pf1N1B4_94 at 99.055 kb on + strand, within Pf1N1B4_94 at 99.055 kb on + strand, within Pf1N1B4_94 at 99.056 kb on - strand, within Pf1N1B4_94 at 99.056 kb on - strand at 99.056 kb on - strand at 99.056 kb on - strand, within Pf1N1B4_94 at 99.109 kb on + strand, within Pf1N1B4_94 at 99.188 kb on - strand at 99.215 kb on - strand, within Pf1N1B4_94 at 99.358 kb on + strand, within Pf1N1B4_94 at 99.359 kb on - strand, within Pf1N1B4_94 at 99.574 kb on + strand at 99.575 kb on - strand at 99.644 kb on + strand at 99.644 kb on + strand at 99.680 kb on + strand at 99.680 kb on + strand at 99.681 kb on - strand at 99.685 kb on + strand at 99.686 kb on - strand at 99.772 kb on + strand at 99.772 kb on + strand at 99.772 kb on + strand at 99.773 kb on - strand at 99.773 kb on - strand at 99.773 kb on - strand at 99.773 kb on - strand at 99.781 kb on + strand at 99.782 kb on - strand at 99.782 kb on - strand at 99.843 kb on + strand at 100.004 kb on - strand at 100.019 kb on + strand at 100.020 kb on - strand at 100.020 kb on - strand at 100.071 kb on - strand at 100.071 kb on - strand at 100.071 kb on - strand at 100.071 kb on - strand at 100.071 kb on - strand at 100.071 kb on - strand at 100.072 kb on + strand at 100.073 kb on - strand at 100.073 kb on - strand at 100.286 kb on + strand, within Pf1N1B4_95 at 100.286 kb on + strand, within Pf1N1B4_95 at 100.286 kb on + strand, within Pf1N1B4_95 at 100.287 kb on - strand, within Pf1N1B4_95 at 100.337 kb on - strand, within Pf1N1B4_95 at 100.337 kb on - strand, within Pf1N1B4_95 at 100.343 kb on + strand, within Pf1N1B4_95 at 100.344 kb on - strand, within Pf1N1B4_95 at 100.349 kb on + strand, within Pf1N1B4_95 at 100.349 kb on + strand, within Pf1N1B4_95 at 100.350 kb on - strand, within Pf1N1B4_95 at 100.350 kb on - strand at 100.467 kb on - strand, within Pf1N1B4_95 at 100.467 kb on - strand, within Pf1N1B4_95 at 100.484 kb on + strand, within Pf1N1B4_95 at 100.484 kb on + strand, within Pf1N1B4_95 at 100.485 kb on - strand, within Pf1N1B4_95 at 100.602 kb on - strand, within Pf1N1B4_95 at 100.602 kb on - strand, within Pf1N1B4_95
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 98,084 - +0.5 98,094 + +0.2 98,095 - +0.4 98,095 - -0.8 98,095 - +1.3 98,095 - +0.3 98,095 - +2.1 98,095 - -0.4 98,192 + Pf1N1B4_93 0.14 -0.5 98,192 + Pf1N1B4_93 0.14 +0.0 98,192 + Pf1N1B4_93 0.14 +0.3 98,193 - Pf1N1B4_93 0.14 +0.8 98,193 - Pf1N1B4_93 0.14 -0.5 98,193 - Pf1N1B4_93 0.14 +0.1 98,887 + -0.8 98,887 + +1.6 98,888 - -0.2 99,055 + Pf1N1B4_94 0.17 +2.6 99,055 + Pf1N1B4_94 0.17 -1.8 99,055 + Pf1N1B4_94 0.17 -1.6 99,056 - Pf1N1B4_94 0.17 -2.6 99,056 - +1.3 99,056 - -1.8 99,056 - Pf1N1B4_94 0.17 +0.8 99,109 + Pf1N1B4_94 0.24 +0.0 99,188 - +2.1 99,215 - Pf1N1B4_94 0.39 -1.6 99,358 + Pf1N1B4_94 0.59 -1.7 99,359 - Pf1N1B4_94 0.60 -2.2 99,574 + -0.2 99,575 - -0.2 99,644 + +1.2 99,644 + -0.8 99,680 + -1.8 99,680 + -0.3 99,681 - +0.3 99,685 + -1.2 99,686 - -1.6 99,772 + +0.7 99,772 + -0.2 99,772 + +0.5 99,773 - -1.8 99,773 - -0.9 99,773 - -0.2 99,773 - -0.2 99,781 + -2.2 99,782 - -0.7 99,782 - -0.2 99,843 + -1.2 100,004 - -0.2 100,019 + +0.8 100,020 - -1.1 100,020 - +0.8 100,071 - +1.1 100,071 - -0.2 100,071 - -0.9 100,071 - +0.3 100,071 - -0.2 100,071 - -0.2 100,072 + -0.2 100,073 - -1.0 100,073 - -0.2 100,286 + Pf1N1B4_95 0.40 -1.6 100,286 + Pf1N1B4_95 0.40 -0.7 100,286 + Pf1N1B4_95 0.40 +1.6 100,287 - Pf1N1B4_95 0.40 +0.5 100,337 - Pf1N1B4_95 0.47 -1.2 100,337 - Pf1N1B4_95 0.47 +0.8 100,343 + Pf1N1B4_95 0.48 -0.2 100,344 - Pf1N1B4_95 0.48 +0.3 100,349 + Pf1N1B4_95 0.49 -2.2 100,349 + Pf1N1B4_95 0.49 +0.4 100,350 - Pf1N1B4_95 0.49 -0.2 100,350 - +1.3 100,467 - Pf1N1B4_95 0.66 +0.8 100,467 - Pf1N1B4_95 0.66 -0.2 100,484 + Pf1N1B4_95 0.69 -1.2 100,484 + Pf1N1B4_95 0.69 -0.2 100,485 - Pf1N1B4_95 0.69 +0.5 100,602 - Pf1N1B4_95 0.86 +0.1 100,602 - Pf1N1B4_95 0.86 +1.1
Or see this region's nucleotide sequence