Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_771

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_769 and Pf1N1B4_770 are separated by 324 nucleotidesPf1N1B4_770 and Pf1N1B4_771 overlap by 18 nucleotidesPf1N1B4_771 and Pf1N1B4_772 are separated by 193 nucleotidesPf1N1B4_772 and Pf1N1B4_773 overlap by 1 nucleotides Pf1N1B4_769 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 873,701 to 875,161 _769 Pf1N1B4_770 - hypothetical protein, at 875,486 to 875,626 _770 Pf1N1B4_771 - ABC transporter for L-asparagine and L-glutamate, periplasmic substrate-binding component (from data), at 875,609 to 876,523 _771 Pf1N1B4_772 - ABC transporter for L-asparagine and L-glutamate, permease component 1 (from data), at 876,717 to 877,463 _772 Pf1N1B4_773 - ABC transporter for L-asparagine and L-glutamate, permease subunit 2 (from data), at 877,463 to 878,134 _773 Position (kb) 875 876 877Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 874.652 kb on + strand, within Pf1N1B4_769at 874.653 kb on - strand, within Pf1N1B4_769at 874.766 kb on + strand, within Pf1N1B4_769at 874.913 kb on + strand, within Pf1N1B4_769at 874.913 kb on + strand, within Pf1N1B4_769at 874.913 kb on + strand, within Pf1N1B4_769at 874.913 kb on + strand, within Pf1N1B4_769at 874.957 kb on + strand, within Pf1N1B4_769at 874.991 kb on + strand, within Pf1N1B4_769at 874.991 kb on + strand, within Pf1N1B4_769at 875.009 kb on + strand, within Pf1N1B4_769at 875.009 kb on + strand, within Pf1N1B4_769at 875.009 kb on + strand, within Pf1N1B4_769at 875.114 kb on + strandat 875.225 kb on + strandat 875.225 kb on + strandat 875.225 kb on + strandat 875.225 kb on + strandat 875.226 kb on - strandat 875.226 kb on - strandat 875.281 kb on + strandat 875.282 kb on - strandat 875.284 kb on + strandat 875.284 kb on + strandat 875.285 kb on - strandat 875.285 kb on - strandat 875.299 kb on + strandat 875.340 kb on - strandat 875.410 kb on - strandat 875.464 kb on - strandat 875.494 kb on + strandat 875.582 kb on + strand, within Pf1N1B4_770at 875.582 kb on + strand, within Pf1N1B4_770at 875.583 kb on - strand, within Pf1N1B4_770at 875.584 kb on + strand, within Pf1N1B4_770at 875.584 kb on + strand, within Pf1N1B4_770at 875.584 kb on + strand, within Pf1N1B4_770at 875.584 kb on + strand, within Pf1N1B4_770at 875.762 kb on + strand, within Pf1N1B4_771at 875.795 kb on + strand, within Pf1N1B4_771at 875.871 kb on - strand, within Pf1N1B4_771at 875.871 kb on - strand, within Pf1N1B4_771at 876.035 kb on + strand, within Pf1N1B4_771at 876.036 kb on - strand, within Pf1N1B4_771at 876.036 kb on - strandat 876.036 kb on - strand, within Pf1N1B4_771at 876.302 kb on + strand, within Pf1N1B4_771at 876.303 kb on - strand, within Pf1N1B4_771at 876.371 kb on + strand, within Pf1N1B4_771at 876.371 kb on + strand, within Pf1N1B4_771at 876.371 kb on + strand, within Pf1N1B4_771at 876.371 kb on + strand, within Pf1N1B4_771at 876.371 kb on + strand, within Pf1N1B4_771at 876.371 kb on + strand, within Pf1N1B4_771at 876.371 kb on + strand, within Pf1N1B4_771at 876.371 kb on + strand, within Pf1N1B4_771at 876.371 kb on + strand, within Pf1N1B4_771at 876.372 kb on - strand, within Pf1N1B4_771at 876.372 kb on - strand, within Pf1N1B4_771at 876.372 kb on - strand, within Pf1N1B4_771at 876.687 kb on + strandat 876.687 kb on + strandat 876.687 kb on + strandat 876.687 kb on + strandat 876.688 kb on - strandat 876.688 kb on - strandat 876.723 kb on + strandat 876.724 kb on - strandat 876.724 kb on - strandat 876.724 kb on - strandat 876.777 kb on + strandat 876.777 kb on + strandat 876.777 kb on + strandat 876.778 kb on - strandat 876.789 kb on + strandat 876.789 kb on + strandat 876.790 kb on - strandat 876.919 kb on - strand, within Pf1N1B4_772at 876.919 kb on - strand, within Pf1N1B4_772at 876.919 kb on - strand, within Pf1N1B4_772at 876.919 kb on - strand, within Pf1N1B4_772at 876.970 kb on - strandat 877.014 kb on + strand, within Pf1N1B4_772at 877.014 kb on + strand, within Pf1N1B4_772at 877.014 kb on + strand, within Pf1N1B4_772at 877.014 kb on + strand, within Pf1N1B4_772at 877.015 kb on - strandat 877.015 kb on - strandat 877.015 kb on - strand, within Pf1N1B4_772at 877.182 kb on + strand, within Pf1N1B4_772at 877.182 kb on + strand, within Pf1N1B4_772at 877.183 kb on - strand, within Pf1N1B4_772at 877.232 kb on + strand, within Pf1N1B4_772at 877.252 kb on + strand, within Pf1N1B4_772at 877.253 kb on - strand, within Pf1N1B4_772at 877.253 kb on - strand, within Pf1N1B4_772at 877.371 kb on + strand, within Pf1N1B4_772at 877.371 kb on + strand, within Pf1N1B4_772at 877.371 kb on + strand, within Pf1N1B4_772at 877.372 kb on - strand, within Pf1N1B4_772at 877.372 kb on - strand, within Pf1N1B4_772at 877.372 kb on - strand, within Pf1N1B4_772at 877.372 kb on - strand, within Pf1N1B4_772at 877.372 kb on - strand, within Pf1N1B4_772

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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874,652 + Pf1N1B4_769 0.65 +1.6
874,653 - Pf1N1B4_769 0.65 +0.7
874,766 + Pf1N1B4_769 0.73 +0.4
874,913 + Pf1N1B4_769 0.83 +0.5
874,913 + Pf1N1B4_769 0.83 -0.4
874,913 + Pf1N1B4_769 0.83 +1.3
874,913 + Pf1N1B4_769 0.83 +1.0
874,957 + Pf1N1B4_769 0.86 -0.0
874,991 + Pf1N1B4_769 0.88 -0.3
874,991 + Pf1N1B4_769 0.88 +2.1
875,009 + Pf1N1B4_769 0.90 +1.1
875,009 + Pf1N1B4_769 0.90 +1.0
875,009 + Pf1N1B4_769 0.90 +0.8
875,114 + -0.5
875,225 + -0.4
875,225 + +0.0
875,225 + +0.2
875,225 + -0.6
875,226 - -2.0
875,226 - +0.0
875,281 + +0.7
875,282 - +1.3
875,284 + -2.3
875,284 + -1.0
875,285 - -2.3
875,285 - -0.5
875,299 + -1.4
875,340 - +1.6
875,410 - +0.4
875,464 - -0.4
875,494 + +0.0
875,582 + Pf1N1B4_770 0.68 -1.2
875,582 + Pf1N1B4_770 0.68 -1.2
875,583 - Pf1N1B4_770 0.69 -2.0
875,584 + Pf1N1B4_770 0.70 -1.4
875,584 + Pf1N1B4_770 0.70 -1.6
875,584 + Pf1N1B4_770 0.70 +0.0
875,584 + Pf1N1B4_770 0.70 -1.0
875,762 + Pf1N1B4_771 0.17 -1.6
875,795 + Pf1N1B4_771 0.20 -1.0
875,871 - Pf1N1B4_771 0.29 +0.0
875,871 - Pf1N1B4_771 0.29 -1.0
876,035 + Pf1N1B4_771 0.47 -1.0
876,036 - Pf1N1B4_771 0.47 -1.6
876,036 - +0.0
876,036 - Pf1N1B4_771 0.47 -2.9
876,302 + Pf1N1B4_771 0.76 -1.6
876,303 - Pf1N1B4_771 0.76 -2.2
876,371 + Pf1N1B4_771 0.83 -1.0
876,371 + Pf1N1B4_771 0.83 -1.8
876,371 + Pf1N1B4_771 0.83 -1.6
876,371 + Pf1N1B4_771 0.83 -1.0
876,371 + Pf1N1B4_771 0.83 -1.6
876,371 + Pf1N1B4_771 0.83 -1.0
876,371 + Pf1N1B4_771 0.83 -0.5
876,371 + Pf1N1B4_771 0.83 -3.2
876,371 + Pf1N1B4_771 0.83 -1.0
876,372 - Pf1N1B4_771 0.83 -2.3
876,372 - Pf1N1B4_771 0.83 -1.6
876,372 - Pf1N1B4_771 0.83 -1.0
876,687 + +0.3
876,687 + +0.0
876,687 + -1.8
876,687 + -0.6
876,688 - -0.4
876,688 - +0.0
876,723 + -2.3
876,724 - -0.4
876,724 - -1.3
876,724 - -0.6
876,777 + -1.6
876,777 + -3.0
876,777 + -1.0
876,778 - +0.0
876,789 + -2.3
876,789 + -0.4
876,790 - -2.0
876,919 - Pf1N1B4_772 0.27 -1.6
876,919 - Pf1N1B4_772 0.27 -2.6
876,919 - Pf1N1B4_772 0.27 -3.2
876,919 - Pf1N1B4_772 0.27 -1.0
876,970 - -1.0
877,014 + Pf1N1B4_772 0.40 -1.0
877,014 + Pf1N1B4_772 0.40 -1.6
877,014 + Pf1N1B4_772 0.40 -1.6
877,014 + Pf1N1B4_772 0.40 -2.0
877,015 - +0.0
877,015 - +0.0
877,015 - Pf1N1B4_772 0.40 -2.0
877,182 + Pf1N1B4_772 0.62 -2.3
877,182 + Pf1N1B4_772 0.62 -0.6
877,183 - Pf1N1B4_772 0.62 -2.3
877,232 + Pf1N1B4_772 0.69 -1.0
877,252 + Pf1N1B4_772 0.72 -0.6
877,253 - Pf1N1B4_772 0.72 -1.0
877,253 - Pf1N1B4_772 0.72 +2.0
877,371 + Pf1N1B4_772 0.88 -1.6
877,371 + Pf1N1B4_772 0.88 -2.0
877,371 + Pf1N1B4_772 0.88 -1.6
877,372 - Pf1N1B4_772 0.88 -1.0
877,372 - Pf1N1B4_772 0.88 -1.0
877,372 - Pf1N1B4_772 0.88 -1.6
877,372 - Pf1N1B4_772 0.88 -0.4
877,372 - Pf1N1B4_772 0.88 -1.6

Or see this region's nucleotide sequence