Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28480

Experiment: Temperature shift 30_to_34; with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 30_to_34; with MOPS
6,335,339	+		PFLU_RS28475	0.23	+0.4
6,335,339	+		PFLU_RS28475	0.23	-0.5
6,335,340	-		PFLU_RS28475	0.23	-0.1
6,335,340	-		PFLU_RS28475	0.23	+0.1
6,335,340	-		PFLU_RS28475	0.23	+0.4
6,335,340	-		PFLU_RS28475	0.23	-0.3
6,335,441	+		PFLU_RS28475	0.33	-0.7
6,335,441	+		PFLU_RS28475	0.33	-0.7
6,335,441	+		PFLU_RS28475	0.33	+1.4
6,335,441	+		PFLU_RS28475	0.33	+0.9
6,335,441	+		PFLU_RS28475	0.33	-1.6
6,335,441	+		PFLU_RS28475	0.33	+1.5
6,335,441	+		PFLU_RS28475	0.33	+0.2
6,335,441	+		PFLU_RS28475	0.33	+1.5
6,335,441	+		PFLU_RS28475	0.33	+0.5
6,335,442	-		PFLU_RS28475	0.33	+0.6
6,335,442	-		PFLU_RS28475	0.33	+0.8
6,335,442	-		PFLU_RS28475	0.33	+0.3
6,335,516	+		PFLU_RS28475	0.41	-0.0
6,335,516	+		PFLU_RS28475	0.41	-0.2
6,335,516	+		PFLU_RS28475	0.41	-0.5
6,335,516	+		PFLU_RS28475	0.41	+0.9
6,335,516	+		PFLU_RS28475	0.41	+0.0
6,335,517	-		PFLU_RS28475	0.41	-1.1
6,335,517	-		PFLU_RS28475	0.41	-1.0
6,335,517	-		PFLU_RS28475	0.41	+0.3
6,335,528	+		PFLU_RS28475	0.42	-1.1
6,335,529	-		PFLU_RS28475	0.42	+0.4
6,335,669	+		PFLU_RS28475	0.56	-0.5
6,335,702	+		PFLU_RS28475	0.60	-0.6
6,335,702	+		PFLU_RS28475	0.60	+0.4
6,335,702	+		PFLU_RS28475	0.60	+0.5
6,335,702	+		PFLU_RS28475	0.60	+0.4
6,335,702	+		PFLU_RS28475	0.60	+0.5
6,335,702	+		PFLU_RS28475	0.60	-1.9
6,335,702	+		PFLU_RS28475	0.60	+0.4
6,335,702	+		PFLU_RS28475	0.60	+0.3
6,335,702	+		PFLU_RS28475	0.60	+0.1
6,335,702	+		PFLU_RS28475	0.60	+0.5
6,335,702	+		PFLU_RS28475	0.60	-0.5
6,335,702	+		PFLU_RS28475	0.60	+0.0
6,335,702	+		PFLU_RS28475	0.60	-0.5
6,335,703	-		PFLU_RS28475	0.60	+0.1
6,335,703	-		PFLU_RS28475	0.60	+0.1
6,335,703	-		PFLU_RS28475	0.60	+0.3
6,335,703	-		PFLU_RS28475	0.60	+1.3
6,335,703	-		PFLU_RS28475	0.60	-0.4
6,335,703	-		PFLU_RS28475	0.60	-0.6
6,335,703	-		PFLU_RS28475	0.60	+0.1
6,335,703	-		PFLU_RS28475	0.60	-0.5
6,335,703	-		PFLU_RS28475	0.60	+0.1
6,335,703	-		PFLU_RS28475	0.60	+1.2
6,335,703	-		PFLU_RS28475	0.60	+0.2
6,335,703	-		PFLU_RS28475	0.60	-0.5
6,335,703	-		PFLU_RS28475	0.60	+1.1
6,335,703	-		PFLU_RS28475	0.60	+0.7
6,335,703	-		PFLU_RS28475	0.60	-0.2
6,335,703	-		PFLU_RS28475	0.60	+0.0
6,335,703	-		PFLU_RS28475	0.60	+0.0
6,335,703	-		PFLU_RS28475	0.60	-0.5
6,335,705	-		PFLU_RS28475	0.60	-0.5
6,335,730	+		PFLU_RS28475	0.62	+0.8
6,335,858	+		PFLU_RS28475	0.75	+1.9
6,335,858	+		PFLU_RS28475	0.75	+0.2
6,335,858	+		PFLU_RS28475	0.75	-0.9
6,335,858	+		PFLU_RS28475	0.75	-0.5
6,335,858	+		PFLU_RS28475	0.75	+0.4
6,335,858	+		PFLU_RS28475	0.75	+0.5
6,335,858	+		PFLU_RS28475	0.75	+0.1
6,335,858	+		PFLU_RS28475	0.75	+0.6
6,335,858	+		PFLU_RS28475	0.75	+2.6
6,335,858	+		PFLU_RS28475	0.75	+0.4
6,335,858	+		PFLU_RS28475	0.75	+0.8
6,335,858	+		PFLU_RS28475	0.75	+0.8
6,335,858	+		PFLU_RS28475	0.75	+1.1
6,335,858	+		PFLU_RS28475	0.75	-0.2
6,335,858	+		PFLU_RS28475	0.75	+0.6
6,335,859	-		PFLU_RS28475	0.75	+0.1
6,335,859	-		PFLU_RS28475	0.75	-1.6
6,335,859	-		PFLU_RS28475	0.75	+0.6
6,335,859	-		PFLU_RS28475	0.75	-0.2
6,335,859	-		PFLU_RS28475	0.75	-1.5
6,335,859	-		PFLU_RS28475	0.75	-0.1
6,335,859	-		PFLU_RS28475	0.75	-0.0
6,335,859	-		PFLU_RS28475	0.75	+0.9
6,335,859	-		PFLU_RS28475	0.75	-0.1
6,335,862	-		PFLU_RS28475	0.76	-1.1
6,335,862	-		PFLU_RS28475	0.76	-1.3
6,335,883	-		PFLU_RS28475	0.78	+2.7
6,335,885	+		PFLU_RS28475	0.78	-0.9
6,335,885	+		PFLU_RS28475	0.78	-0.2
6,335,885	+		PFLU_RS28475	0.78	-0.3
6,335,885	+		PFLU_RS28475	0.78	+3.5
6,335,885	+		PFLU_RS28475	0.78	+0.4
6,335,885	+		PFLU_RS28475	0.78	+0.2
6,335,886	-		PFLU_RS28475	0.78	+0.9
6,335,886	-		PFLU_RS28475	0.78	-0.3
6,335,886	-		PFLU_RS28475	0.78	+0.2
6,335,886	-		PFLU_RS28475	0.78	+1.0
6,335,886	-		PFLU_RS28475	0.78	-0.8
6,335,886	-		PFLU_RS28475	0.78	-0.0
6,335,886	-		PFLU_RS28475	0.78	-0.2
6,335,886	-		PFLU_RS28475	0.78	+1.2
6,336,056	+				-0.9
6,336,056	+				-0.3
6,336,059	+				+1.3
6,336,059	+				-0.0
6,336,060	-				-0.2
6,336,060	-				+0.8
6,336,060	-				+0.7
6,336,060	-				-1.9
6,336,060	-				-0.1
6,336,060	-				+0.1
6,336,125	+				-1.0
6,336,125	+				+0.4
6,336,151	+				+0.3
6,336,151	+				-0.0
6,336,151	+				+0.1
6,336,151	+				-0.7
6,336,151	+				-1.1
6,336,151	+				+0.0
6,336,151	+				-0.5
6,336,151	+				-1.9
6,336,151	+				-0.1
6,336,151	+				-2.2
6,336,151	+				-0.8
6,336,151	+				-0.1
6,336,151	+				-1.5
6,336,151	+				+0.2
6,336,151	+				+0.1
6,336,151	+				+1.5
6,336,152	-				+0.4
6,336,152	-				+0.4
6,336,152	-				-0.8
6,336,152	-				+0.5
6,336,152	-				-0.1
6,336,226	+		PFLU_RS28480	0.16	-1.7
6,336,227	-		PFLU_RS28480	0.16	-0.1
6,336,453	+		PFLU_RS28480	0.42	-1.3
6,336,453	+		PFLU_RS28480	0.42	+0.2
6,336,453	+		PFLU_RS28480	0.42	+1.0
6,336,453	+		PFLU_RS28480	0.42	-0.7
6,336,454	-		PFLU_RS28480	0.43	-0.9
6,336,454	-		PFLU_RS28480	0.43	+0.7
6,336,454	-		PFLU_RS28480	0.43	+0.0
6,336,454	-		PFLU_RS28480	0.43	-1.4
6,336,454	-		PFLU_RS28480	0.43	+0.2
6,336,585	-		PFLU_RS28480	0.58	-0.2
6,336,640	+		PFLU_RS28480	0.64	+0.6
6,336,640	+		PFLU_RS28480	0.64	+1.1
6,336,641	-		PFLU_RS28480	0.64	+1.1
6,336,641	-		PFLU_RS28480	0.64	+0.6
6,336,661	+		PFLU_RS28480	0.67	+1.3
6,336,662	-		PFLU_RS28480	0.67	+0.6
6,336,662	-		PFLU_RS28480	0.67	-0.1
6,336,796	+		PFLU_RS28480	0.83	+0.5
6,336,796	+		PFLU_RS28480	0.83	-0.5
6,336,812	+		PFLU_RS28480	0.84	-0.1
6,336,826	+		PFLU_RS28480	0.86	+0.4
6,336,826	+		PFLU_RS28480	0.86	+1.4
6,336,826	+		PFLU_RS28480	0.86	-0.6
6,336,826	+		PFLU_RS28480	0.86	-0.1
6,336,827	-		PFLU_RS28480	0.86	-0.5
6,336,827	-		PFLU_RS28480	0.86	-1.4
6,336,955	+				-0.8
6,336,955	+				-0.0
6,336,955	+				+0.7
6,336,955	+				+0.1
6,336,955	+				+0.6
6,336,955	+				+1.0
6,336,955	+				+0.2
6,336,955	+				+0.4
6,336,955	+				+0.1
6,336,955	+				+1.9
6,336,955	+				-0.7
6,336,956	-				+0.7
6,336,956	-				-0.5
6,336,956	-				+0.1
6,336,956	-				+0.5
6,336,956	-				-0.6
6,336,956	-				+0.3
6,336,956	-				+1.7
6,336,956	-				+0.5
6,336,956	-				+0.4
6,336,956	-				+0.7
6,336,956	-				+0.5
6,336,979	+				-0.1
6,336,979	+				-0.1
6,336,979	+				+1.1
6,336,979	+				+0.6
6,336,979	+				-0.6
6,336,979	+				-0.9
6,336,979	+				-0.4
6,336,979	+				+1.1
6,336,979	+				+0.1
6,336,979	+				-0.8
6,336,979	+				+2.2
6,336,979	+				+0.3
6,336,980	-				+0.3
6,336,980	-				+0.4
6,336,980	-				-1.5
6,336,980	-				+0.5
6,336,980	-				-0.1
6,336,980	-				-0.7
6,336,980	-				+0.4
6,336,980	-				-0.3
6,337,015	+				-0.5
6,337,015	+				-2.6
6,337,016	-				-0.1
6,337,016	-				+0.7
6,337,093	+		PFLU_RS28485	0.17	+1.0
6,337,093	+		PFLU_RS28485	0.17	-1.5
6,337,093	+		PFLU_RS28485	0.17	-0.5
6,337,093	+		PFLU_RS28485	0.17	-0.2
6,337,093	+		PFLU_RS28485	0.17	+0.4
6,337,093	+		PFLU_RS28485	0.17	-1.9
6,337,093	+		PFLU_RS28485	0.17	+0.1
6,337,093	+		PFLU_RS28485	0.17	+0.6
6,337,093	+		PFLU_RS28485	0.17	-0.0
6,337,093	+		PFLU_RS28485	0.17	-1.8
6,337,093	+		PFLU_RS28485	0.17	+0.3
6,337,093	+		PFLU_RS28485	0.17	+0.1
6,337,093	+		PFLU_RS28485	0.17	+0.9
6,337,093	+		PFLU_RS28485	0.17	+0.9
6,337,093	+		PFLU_RS28485	0.17	-0.3
6,337,094	-		PFLU_RS28485	0.17	-1.5
6,337,094	-		PFLU_RS28485	0.17	-0.1
6,337,094	-		PFLU_RS28485	0.17	-0.2
6,337,094	-		PFLU_RS28485	0.17	-1.1
6,337,232	+		PFLU_RS28485	0.38	+0.1
6,337,233	-		PFLU_RS28485	0.38	-1.1
6,337,233	-		PFLU_RS28485	0.38	+0.1
6,337,255	+		PFLU_RS28485	0.41	-0.2
6,337,255	+		PFLU_RS28485	0.41	-3.0
6,337,255	+		PFLU_RS28485	0.41	+0.9
6,337,256	-		PFLU_RS28485	0.41	-0.2
6,337,256	-		PFLU_RS28485	0.41	-0.9
6,337,396	+		PFLU_RS28485	0.62	+0.7
6,337,396	+		PFLU_RS28485	0.62	-0.2
6,337,469	-		PFLU_RS28485	0.73	+0.7
6,337,469	-		PFLU_RS28485	0.73	-1.1
6,337,469	-		PFLU_RS28485	0.73	+1.3
6,337,516	+		PFLU_RS28485	0.80	-0.3
6,337,516	+		PFLU_RS28485	0.80	+0.9
6,337,516	+		PFLU_RS28485	0.80	-0.8
6,337,516	+		PFLU_RS28485	0.80	+1.1
6,337,516	+		PFLU_RS28485	0.80	-0.5
6,337,516	+		PFLU_RS28485	0.80	-0.4
6,337,516	+		PFLU_RS28485	0.80	-1.1
6,337,516	+		PFLU_RS28485	0.80	-0.7
6,337,516	+		PFLU_RS28485	0.80	-0.8
6,337,516	+		PFLU_RS28485	0.80	+0.5
6,337,517	-		PFLU_RS28485	0.80	-0.6
6,337,517	-		PFLU_RS28485	0.80	+1.5
6,337,517	-		PFLU_RS28485	0.80	-1.1
6,337,517	-		PFLU_RS28485	0.80	-0.2
6,337,517	-		PFLU_RS28485	0.80	-2.0
6,337,517	-		PFLU_RS28485	0.80	+0.9
6,337,517	-		PFLU_RS28485	0.80	+0.9
6,337,517	-		PFLU_RS28485	0.80	+0.1
6,337,517	-		PFLU_RS28485	0.80	-0.6
6,337,517	-		PFLU_RS28485	0.80	-0.1
6,337,517	-		PFLU_RS28485	0.80	-1.5
6,337,519	+		PFLU_RS28485	0.81	-0.9
6,337,519	+		PFLU_RS28485	0.81	+1.0
6,337,519	+		PFLU_RS28485	0.81	+0.1
6,337,519	+		PFLU_RS28485	0.81	+0.1
6,337,519	+		PFLU_RS28485	0.81	-0.7
6,337,520	-		PFLU_RS28485	0.81	+2.2
6,337,520	-		PFLU_RS28485	0.81	-0.2
6,337,520	-		PFLU_RS28485	0.81	-0.8
6,337,556	+		PFLU_RS28485	0.86	-1.1
6,337,556	+		PFLU_RS28485	0.86	-0.3
6,337,556	+		PFLU_RS28485	0.86	-0.6
6,337,556	+		PFLU_RS28485	0.86	-0.6
6,337,557	-		PFLU_RS28485	0.86	-0.1
6,337,557	-		PFLU_RS28485	0.86	-0.3
6,337,557	-		PFLU_RS28485	0.86	-1.7
6,337,557	-		PFLU_RS28485	0.86	-0.7
6,337,557	-		PFLU_RS28485	0.86	+0.1
6,337,557	-		PFLU_RS28485	0.86	-0.5
6,337,592	+				-0.5
6,337,636	-				-0.2
6,337,636	-				-0.7
6,337,666	+				+0.5
6,337,666	+				+0.2
6,337,667	-				-1.4
6,337,667	-				-0.3
6,337,667	-				+0.8
6,337,667	-				+0.6
6,337,686	-				+0.3
6,337,686	-				+0.7
6,337,686	-				-0.7
6,337,692	+				+0.4
6,337,693	-				-0.4
6,337,700	+				-0.9
6,337,701	-				-0.5
6,337,706	+				+0.3
6,337,706	+				+0.5
6,337,706	+				+0.5
6,337,706	+				+0.0
6,337,706	+				+0.6
6,337,706	+				+0.6
6,337,707	-				+0.3
6,337,707	-				-2.8
6,337,707	-				-0.3
6,337,718	+				+1.1
6,337,718	+				-0.6
6,337,718	+				-0.9
6,337,718	+				+0.4
6,337,718	+				-0.1
6,337,718	+				-1.7
6,337,718	+				+0.9
6,337,718	+				-0.3
6,337,718	+				+0.5
6,337,718	+				+0.3
6,337,718	+				+0.3
6,337,718	+				+0.3
6,337,718	+				+0.4
6,337,718	+				+0.9
6,337,718	+				-0.4
6,337,718	+				+0.5
6,337,718	+				+1.4
6,337,718	+				+0.5
6,337,719	-				+1.0
6,337,719	-				+0.3
6,337,719	-				+0.6
6,337,719	-				+0.3
6,337,719	-				+0.3
6,337,719	-				-0.5
6,337,719	-				-2.7
6,337,719	-				+0.9
6,337,719	-				+0.7
6,337,719	-				+1.1
6,337,725	-				+0.9
6,337,725	-				+0.4
6,337,725	-				-1.2
6,337,748	-				+0.4
6,337,757	-				+0.4
6,337,774	+				+0.0
6,337,774	+				+0.0
6,337,774	+				-1.5
6,337,774	+				-2.4
6,337,774	+				+1.3
6,337,774	+				-0.1
6,337,774	+				-0.5
6,337,774	+				+0.6
6,337,774	+				+0.3
6,337,774	+				-1.0
6,337,774	+				+0.2
6,337,774	+				-0.7
6,337,774	+				-0.5
6,337,774	+				-0.1
6,337,775	-				+1.1
6,337,775	-				+0.0
6,337,775	-				-0.9
6,337,775	-				-1.1
6,337,775	-				-0.8
6,337,775	-				-1.7
6,337,775	-				+0.8
6,337,775	-				+0.6
6,337,775	-				+0.4
6,337,775	-				-0.6
6,337,775	-				+0.6
6,337,775	-				-0.0
6,337,775	-				+0.0
6,337,775	-				+0.8
6,337,775	-				+0.5
6,337,776	+				+1.0
6,337,776	+				-0.4
6,337,776	+				+0.1
6,337,777	-				-1.6
6,337,777	-				-2.0
6,337,814	+				+0.8
6,337,815	-				+0.3
6,337,815	-				-2.8
6,337,815	-				-0.8
6,337,825	+				-0.9
6,337,825	+				-0.9
6,337,825	+				+0.0
6,337,826	-				-0.7
6,337,826	-				-0.3
6,337,878	-				+1.0
6,337,878	-				+0.2
6,337,944	+		PFLU_RS28490	0.10	-0.5