Experiment: Formate deepwell vitamin and casamino FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03270 and MMP_RS03275 are separated by 64 nucleotides MMP_RS03275 and MMP_RS03280 are separated by 63 nucleotides MMP_RS03280 and MMP_RS03285 are separated by 117 nucleotides MMP_RS03285 and MMP_RS03290 are separated by 82 nucleotides
MMP_RS03270: MMP_RS03270 - ADP-ribosylglycohydrolase family protein, at 616,692 to 617,600
_RS03270
MMP_RS03275: MMP_RS03275 - TIGR00266 family protein, at 617,665 to 618,333
_RS03275
MMP_RS03280: MMP_RS03280 - pyridoxamine 5'-phosphate oxidase family protein, at 618,397 to 618,798
_RS03280
MMP_RS03285: MMP_RS03285 - 50S ribosomal protein L14e, at 618,916 to 619,149
_RS03285
MMP_RS03290: MMP_RS03290 - AAA family ATPase, at 619,232 to 619,768
_RS03290
Position (kb) 617
618
619 Strain fitness (log2 ratio) -1
0
1 at 616.672 kb on - strand at 616.962 kb on - strand, within MMP_RS03270 at 616.970 kb on - strand, within MMP_RS03270 at 616.970 kb on - strand, within MMP_RS03270 at 617.033 kb on - strand, within MMP_RS03270 at 617.127 kb on + strand, within MMP_RS03270 at 617.434 kb on - strand, within MMP_RS03270 at 617.472 kb on - strand, within MMP_RS03270 at 617.650 kb on + strand at 617.783 kb on - strand, within MMP_RS03275 at 617.784 kb on + strand, within MMP_RS03275 at 617.853 kb on + strand, within MMP_RS03275 at 617.913 kb on - strand, within MMP_RS03275 at 617.915 kb on - strand, within MMP_RS03275 at 618.232 kb on - strand, within MMP_RS03275 at 618.233 kb on + strand, within MMP_RS03275 at 618.308 kb on + strand at 618.395 kb on + strand at 618.395 kb on + strand at 618.443 kb on - strand, within MMP_RS03280 at 618.482 kb on - strand, within MMP_RS03280 at 618.524 kb on - strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280 at 618.658 kb on - strand, within MMP_RS03280 at 618.742 kb on + strand, within MMP_RS03280 at 618.742 kb on + strand, within MMP_RS03280 at 618.746 kb on + strand, within MMP_RS03280 at 618.753 kb on + strand, within MMP_RS03280 at 618.779 kb on - strand at 618.826 kb on - strand at 618.842 kb on - strand at 618.842 kb on - strand at 618.842 kb on - strand at 618.937 kb on - strand at 618.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate deepwell vitamin and casamino FREE remove 616,672 - +0.2 616,962 - MMP_RS03270 0.30 -0.1 616,970 - MMP_RS03270 0.31 -0.0 616,970 - MMP_RS03270 0.31 -0.2 617,033 - MMP_RS03270 0.38 -0.4 617,127 + MMP_RS03270 0.48 +0.0 617,434 - MMP_RS03270 0.82 +0.1 617,472 - MMP_RS03270 0.86 -0.2 617,650 + -0.2 617,783 - MMP_RS03275 0.18 +0.6 617,784 + MMP_RS03275 0.18 +0.1 617,853 + MMP_RS03275 0.28 -0.3 617,913 - MMP_RS03275 0.37 +0.4 617,915 - MMP_RS03275 0.37 +0.2 618,232 - MMP_RS03275 0.85 +0.3 618,233 + MMP_RS03275 0.85 +0.1 618,308 + -0.8 618,395 + +0.4 618,395 + +0.3 618,443 - MMP_RS03280 0.11 +0.4 618,482 - MMP_RS03280 0.21 -0.1 618,524 - MMP_RS03280 0.32 +0.3 618,579 + MMP_RS03280 0.45 +0.4 618,579 + MMP_RS03280 0.45 +0.3 618,658 - MMP_RS03280 0.65 -0.1 618,742 + MMP_RS03280 0.86 +0.2 618,742 + MMP_RS03280 0.86 -0.1 618,746 + MMP_RS03280 0.87 +0.0 618,753 + MMP_RS03280 0.89 -0.3 618,779 - -0.3 618,826 - -0.3 618,842 - -0.3 618,842 - +0.2 618,842 - -0.2 618,937 - -1.7 618,937 - -1.1
Or see this region's nucleotide sequence