Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19310

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19305 and CSW01_19310 are separated by 300 nucleotidesCSW01_19310 and CSW01_19315 are separated by 138 nucleotides CSW01_19305: CSW01_19305 - M23 family peptidase, at 991,539 to 992,480 _19305 CSW01_19310: CSW01_19310 - hypothetical protein, at 992,781 to 992,924 _19310 CSW01_19315: CSW01_19315 - PTS mannitol transporter subunit IICBA, at 993,063 to 995,012 _19315 Position (kb) 992 993Strain fitness (log2 ratio) -1 0 1at 991.973 kb on - strand, within CSW01_19305at 992.022 kb on + strand, within CSW01_19305at 992.129 kb on + strand, within CSW01_19305at 992.270 kb on + strand, within CSW01_19305at 992.382 kb on - strand, within CSW01_19305at 992.577 kb on - strandat 992.579 kb on + strandat 992.586 kb on + strandat 992.586 kb on + strandat 992.586 kb on + strandat 992.586 kb on + strandat 992.592 kb on - strandat 992.594 kb on - strandat 992.594 kb on - strandat 992.609 kb on - strandat 992.611 kb on - strandat 992.682 kb on + strandat 993.218 kb on + strandat 993.305 kb on - strand, within CSW01_19315at 993.307 kb on - strand, within CSW01_19315at 993.376 kb on + strand, within CSW01_19315at 993.556 kb on + strand, within CSW01_19315at 993.585 kb on + strand, within CSW01_19315at 993.588 kb on + strand, within CSW01_19315at 993.727 kb on - strand, within CSW01_19315at 993.908 kb on + strand, within CSW01_19315at 993.912 kb on - strand, within CSW01_19315

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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991,973 - CSW01_19305 0.46 +0.7
992,022 + CSW01_19305 0.51 +0.4
992,129 + CSW01_19305 0.63 -0.0
992,270 + CSW01_19305 0.78 +0.3
992,382 - CSW01_19305 0.89 -0.1
992,577 - +0.4
992,579 + +0.6
992,586 + -0.2
992,586 + +0.0
992,586 + +0.4
992,586 + -0.4
992,592 - +0.6
992,594 - -0.1
992,594 - -0.2
992,609 - +0.0
992,611 - -1.1
992,682 + +0.1
993,218 + +0.7
993,305 - CSW01_19315 0.12 +1.0
993,307 - CSW01_19315 0.13 +0.3
993,376 + CSW01_19315 0.16 +0.1
993,556 + CSW01_19315 0.25 -0.2
993,585 + CSW01_19315 0.27 +0.1
993,588 + CSW01_19315 0.27 +0.1
993,727 - CSW01_19315 0.34 -1.4
993,908 + CSW01_19315 0.43 +0.2
993,912 - CSW01_19315 0.44 +0.7

Or see this region's nucleotide sequence