Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17770

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17765 and CSW01_17770 are separated by 9 nucleotidesCSW01_17770 and CSW01_17775 overlap by 4 nucleotidesCSW01_17775 and CSW01_17780 are separated by 277 nucleotides CSW01_17765: CSW01_17765 - TIGR01666 family membrane protein, at 660,189 to 662,366 _17765 CSW01_17770: CSW01_17770 - two-component sensor histidine kinase, at 662,376 to 663,323 _17770 CSW01_17775: CSW01_17775 - guanylate cyclase, at 663,320 to 663,895 _17775 CSW01_17780: CSW01_17780 - hypothetical protein, at 664,173 to 664,334 _17780 Position (kb) 662 663 664Strain fitness (log2 ratio) -1 0 1 2at 661.377 kb on + strand, within CSW01_17765at 661.402 kb on + strand, within CSW01_17765at 661.402 kb on + strand, within CSW01_17765at 661.565 kb on - strand, within CSW01_17765at 661.568 kb on - strand, within CSW01_17765at 661.576 kb on + strand, within CSW01_17765at 661.672 kb on + strand, within CSW01_17765at 661.690 kb on + strand, within CSW01_17765at 661.704 kb on + strand, within CSW01_17765at 661.704 kb on + strand, within CSW01_17765at 661.704 kb on + strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.856 kb on - strand, within CSW01_17765at 661.900 kb on + strand, within CSW01_17765at 661.934 kb on + strand, within CSW01_17765at 662.029 kb on + strand, within CSW01_17765at 662.053 kb on - strand, within CSW01_17765at 662.053 kb on - strand, within CSW01_17765at 662.053 kb on - strand, within CSW01_17765at 662.063 kb on + strand, within CSW01_17765at 662.100 kb on + strand, within CSW01_17765at 662.184 kb on - strandat 662.189 kb on - strandat 662.217 kb on - strandat 662.234 kb on - strandat 662.240 kb on - strandat 662.393 kb on + strandat 662.399 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.483 kb on - strand, within CSW01_17770at 662.489 kb on - strand, within CSW01_17770at 662.497 kb on + strand, within CSW01_17770at 662.551 kb on + strand, within CSW01_17770at 662.596 kb on + strand, within CSW01_17770at 662.656 kb on - strand, within CSW01_17770at 662.682 kb on + strand, within CSW01_17770at 662.713 kb on + strand, within CSW01_17770at 662.783 kb on - strand, within CSW01_17770at 662.951 kb on - strand, within CSW01_17770at 662.960 kb on + strand, within CSW01_17770at 662.965 kb on - strand, within CSW01_17770at 662.968 kb on - strand, within CSW01_17770at 662.996 kb on + strand, within CSW01_17770at 663.004 kb on - strand, within CSW01_17770at 663.171 kb on + strand, within CSW01_17770at 663.173 kb on + strand, within CSW01_17770at 663.181 kb on + strand, within CSW01_17770at 663.217 kb on - strand, within CSW01_17770at 663.363 kb on + strandat 663.363 kb on - strandat 663.363 kb on - strandat 663.393 kb on - strand, within CSW01_17775at 663.428 kb on + strand, within CSW01_17775at 663.561 kb on + strand, within CSW01_17775at 663.592 kb on - strand, within CSW01_17775at 663.624 kb on + strand, within CSW01_17775at 663.665 kb on + strand, within CSW01_17775at 663.750 kb on + strand, within CSW01_17775at 663.753 kb on - strand, within CSW01_17775at 663.758 kb on - strand, within CSW01_17775at 663.768 kb on - strand, within CSW01_17775at 663.978 kb on - strandat 663.983 kb on - strandat 664.060 kb on + strandat 664.100 kb on + strandat 664.108 kb on - strandat 664.123 kb on + strandat 664.292 kb on - strand, within CSW01_17780at 664.294 kb on + strand, within CSW01_17780

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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661,377 + CSW01_17765 0.55 -0.5
661,402 + CSW01_17765 0.56 +0.0
661,402 + CSW01_17765 0.56 +0.8
661,565 - CSW01_17765 0.63 +0.1
661,568 - CSW01_17765 0.63 +0.6
661,576 + CSW01_17765 0.64 +0.7
661,672 + CSW01_17765 0.68 -0.2
661,690 + CSW01_17765 0.69 -0.6
661,704 + CSW01_17765 0.70 +0.3
661,704 + CSW01_17765 0.70 +1.8
661,704 + CSW01_17765 0.70 +0.6
661,712 - CSW01_17765 0.70 +0.1
661,712 - CSW01_17765 0.70 -1.3
661,712 - CSW01_17765 0.70 +0.1
661,712 - CSW01_17765 0.70 +0.2
661,712 - CSW01_17765 0.70 -0.2
661,712 - CSW01_17765 0.70 -1.0
661,712 - CSW01_17765 0.70 +0.0
661,856 - CSW01_17765 0.77 -0.5
661,900 + CSW01_17765 0.79 -0.1
661,934 + CSW01_17765 0.80 -0.1
662,029 + CSW01_17765 0.84 -0.0
662,053 - CSW01_17765 0.86 -0.5
662,053 - CSW01_17765 0.86 -1.7
662,053 - CSW01_17765 0.86 +0.8
662,063 + CSW01_17765 0.86 -0.4
662,100 + CSW01_17765 0.88 -0.3
662,184 - +0.3
662,189 - +1.7
662,217 - -0.1
662,234 - +0.3
662,240 - +0.3
662,393 + -0.4
662,399 - +0.3
662,428 - -0.3
662,428 - -0.5
662,428 - -0.3
662,428 - +0.7
662,428 - +0.4
662,428 - +0.3
662,483 - CSW01_17770 0.11 +0.3
662,489 - CSW01_17770 0.12 +0.4
662,497 + CSW01_17770 0.13 -0.9
662,551 + CSW01_17770 0.18 -1.5
662,596 + CSW01_17770 0.23 +0.5
662,656 - CSW01_17770 0.30 -0.8
662,682 + CSW01_17770 0.32 -0.0
662,713 + CSW01_17770 0.36 +0.1
662,783 - CSW01_17770 0.43 -0.4
662,951 - CSW01_17770 0.61 -0.6
662,960 + CSW01_17770 0.62 -0.3
662,965 - CSW01_17770 0.62 -0.7
662,968 - CSW01_17770 0.62 +0.2
662,996 + CSW01_17770 0.65 +0.3
663,004 - CSW01_17770 0.66 +0.7
663,171 + CSW01_17770 0.84 -0.1
663,173 + CSW01_17770 0.84 -0.9
663,181 + CSW01_17770 0.85 -0.3
663,217 - CSW01_17770 0.89 -0.2
663,363 + -0.1
663,363 - +0.4
663,363 - -0.5
663,393 - CSW01_17775 0.13 -0.2
663,428 + CSW01_17775 0.19 -0.3
663,561 + CSW01_17775 0.42 -0.5
663,592 - CSW01_17775 0.47 +0.6
663,624 + CSW01_17775 0.53 -0.3
663,665 + CSW01_17775 0.60 -0.5
663,750 + CSW01_17775 0.75 +0.8
663,753 - CSW01_17775 0.75 +0.4
663,758 - CSW01_17775 0.76 +0.4
663,768 - CSW01_17775 0.78 -0.0
663,978 - -0.1
663,983 - -0.1
664,060 + -0.1
664,100 + -1.1
664,108 - +0.3
664,123 + +0.1
664,292 - CSW01_17780 0.73 -0.4
664,294 + CSW01_17780 0.75 +0.2

Or see this region's nucleotide sequence