Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17225

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17215 and CSW01_17220 are separated by 65 nucleotidesCSW01_17220 and CSW01_17225 are separated by 24 nucleotidesCSW01_17225 and CSW01_17230 overlap by 68 nucleotides CSW01_17215: CSW01_17215 - multidrug transporter, at 533,640 to 534,545 _17215 CSW01_17220: CSW01_17220 - phosphonate utilization transcriptional regulator PhnR, at 534,611 to 535,315 _17220 CSW01_17225: CSW01_17225 - putative 2-aminoethylphosphonate ABC transporter permease subunit, at 535,340 to 537,118 _17225 CSW01_17230: CSW01_17230 - putative 2-aminoethylphosphonate ABC transporter ATP-binding protein, at 537,051 to 538,262 _17230 Position (kb) 535 536 537 538Strain fitness (log2 ratio) -2 -1 0 1 2at 534.509 kb on - strandat 534.545 kb on + strandat 534.578 kb on - strandat 534.617 kb on + strandat 534.632 kb on + strandat 534.690 kb on + strand, within CSW01_17220at 534.705 kb on - strand, within CSW01_17220at 534.734 kb on + strand, within CSW01_17220at 534.787 kb on + strand, within CSW01_17220at 534.802 kb on - strand, within CSW01_17220at 534.839 kb on - strand, within CSW01_17220at 534.859 kb on + strand, within CSW01_17220at 534.874 kb on + strand, within CSW01_17220at 534.916 kb on + strand, within CSW01_17220at 535.103 kb on + strand, within CSW01_17220at 535.172 kb on - strand, within CSW01_17220at 535.224 kb on + strand, within CSW01_17220at 535.333 kb on + strandat 535.356 kb on + strandat 535.382 kb on + strandat 535.452 kb on + strandat 535.523 kb on - strand, within CSW01_17225at 535.577 kb on + strand, within CSW01_17225at 535.577 kb on + strand, within CSW01_17225at 535.577 kb on + strand, within CSW01_17225at 535.577 kb on + strand, within CSW01_17225at 535.585 kb on - strand, within CSW01_17225at 535.639 kb on + strand, within CSW01_17225at 535.788 kb on - strand, within CSW01_17225at 535.788 kb on - strand, within CSW01_17225at 535.788 kb on - strand, within CSW01_17225at 535.814 kb on - strand, within CSW01_17225at 535.892 kb on - strand, within CSW01_17225at 535.935 kb on + strand, within CSW01_17225at 535.941 kb on - strand, within CSW01_17225at 535.943 kb on - strand, within CSW01_17225at 535.945 kb on - strand, within CSW01_17225at 535.966 kb on - strand, within CSW01_17225at 536.092 kb on - strand, within CSW01_17225at 536.111 kb on + strand, within CSW01_17225at 536.121 kb on + strand, within CSW01_17225at 536.121 kb on + strand, within CSW01_17225at 536.124 kb on - strand, within CSW01_17225at 536.124 kb on - strand, within CSW01_17225at 536.129 kb on - strand, within CSW01_17225at 536.129 kb on - strand, within CSW01_17225at 536.129 kb on - strand, within CSW01_17225at 536.131 kb on + strand, within CSW01_17225at 536.257 kb on + strand, within CSW01_17225at 536.262 kb on + strand, within CSW01_17225at 536.262 kb on + strand, within CSW01_17225at 536.265 kb on - strand, within CSW01_17225at 536.265 kb on - strand, within CSW01_17225at 536.270 kb on - strand, within CSW01_17225at 536.270 kb on - strand, within CSW01_17225at 536.270 kb on - strand, within CSW01_17225at 536.270 kb on - strand, within CSW01_17225at 536.392 kb on - strand, within CSW01_17225at 536.497 kb on - strand, within CSW01_17225at 536.500 kb on + strand, within CSW01_17225at 536.500 kb on + strand, within CSW01_17225at 536.500 kb on + strand, within CSW01_17225at 536.508 kb on - strand, within CSW01_17225at 536.530 kb on - strand, within CSW01_17225at 536.621 kb on - strand, within CSW01_17225at 536.665 kb on + strand, within CSW01_17225at 536.691 kb on + strand, within CSW01_17225at 536.787 kb on - strand, within CSW01_17225at 536.895 kb on + strand, within CSW01_17225at 537.030 kb on + strandat 537.064 kb on + strandat 537.072 kb on - strandat 537.120 kb on + strandat 537.133 kb on - strandat 537.182 kb on - strand, within CSW01_17230at 537.183 kb on - strand, within CSW01_17230at 537.237 kb on - strand, within CSW01_17230at 537.237 kb on - strand, within CSW01_17230at 537.241 kb on + strand, within CSW01_17230at 537.249 kb on - strand, within CSW01_17230at 537.320 kb on + strand, within CSW01_17230at 537.336 kb on + strand, within CSW01_17230at 537.405 kb on - strand, within CSW01_17230at 537.415 kb on - strand, within CSW01_17230at 537.518 kb on - strand, within CSW01_17230at 537.519 kb on + strand, within CSW01_17230at 537.520 kb on + strand, within CSW01_17230at 537.528 kb on - strand, within CSW01_17230at 537.562 kb on - strand, within CSW01_17230at 537.573 kb on + strand, within CSW01_17230at 537.581 kb on - strand, within CSW01_17230at 537.661 kb on + strand, within CSW01_17230at 537.820 kb on - strand, within CSW01_17230at 537.820 kb on - strand, within CSW01_17230

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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534,509 - -0.9
534,545 + -0.5
534,578 - +1.3
534,617 + -1.0
534,632 + +2.2
534,690 + CSW01_17220 0.11 -1.5
534,705 - CSW01_17220 0.13 +1.8
534,734 + CSW01_17220 0.17 +0.0
534,787 + CSW01_17220 0.25 +0.3
534,802 - CSW01_17220 0.27 -1.1
534,839 - CSW01_17220 0.32 -0.1
534,859 + CSW01_17220 0.35 -0.1
534,874 + CSW01_17220 0.37 -0.4
534,916 + CSW01_17220 0.43 +0.1
535,103 + CSW01_17220 0.70 -0.5
535,172 - CSW01_17220 0.80 -0.7
535,224 + CSW01_17220 0.87 +0.6
535,333 + -0.1
535,356 + -0.7
535,382 + +0.7
535,452 + +0.4
535,523 - CSW01_17225 0.10 +0.5
535,577 + CSW01_17225 0.13 +0.4
535,577 + CSW01_17225 0.13 -0.0
535,577 + CSW01_17225 0.13 +0.3
535,577 + CSW01_17225 0.13 -0.9
535,585 - CSW01_17225 0.14 +0.1
535,639 + CSW01_17225 0.17 -1.0
535,788 - CSW01_17225 0.25 +0.2
535,788 - CSW01_17225 0.25 +0.3
535,788 - CSW01_17225 0.25 -0.9
535,814 - CSW01_17225 0.27 +0.5
535,892 - CSW01_17225 0.31 -0.3
535,935 + CSW01_17225 0.33 -0.1
535,941 - CSW01_17225 0.34 -0.2
535,943 - CSW01_17225 0.34 +0.3
535,945 - CSW01_17225 0.34 -0.2
535,966 - CSW01_17225 0.35 -0.7
536,092 - CSW01_17225 0.42 +0.1
536,111 + CSW01_17225 0.43 -0.1
536,121 + CSW01_17225 0.44 -0.4
536,121 + CSW01_17225 0.44 +0.1
536,124 - CSW01_17225 0.44 -0.2
536,124 - CSW01_17225 0.44 -2.2
536,129 - CSW01_17225 0.44 -0.2
536,129 - CSW01_17225 0.44 +0.1
536,129 - CSW01_17225 0.44 +0.6
536,131 + CSW01_17225 0.44 +0.4
536,257 + CSW01_17225 0.52 +1.1
536,262 + CSW01_17225 0.52 -0.9
536,262 + CSW01_17225 0.52 -0.2
536,265 - CSW01_17225 0.52 -0.3
536,265 - CSW01_17225 0.52 +0.3
536,270 - CSW01_17225 0.52 +2.2
536,270 - CSW01_17225 0.52 +0.3
536,270 - CSW01_17225 0.52 -0.1
536,270 - CSW01_17225 0.52 +0.3
536,392 - CSW01_17225 0.59 +0.1
536,497 - CSW01_17225 0.65 -0.1
536,500 + CSW01_17225 0.65 -0.1
536,500 + CSW01_17225 0.65 +0.4
536,500 + CSW01_17225 0.65 -0.4
536,508 - CSW01_17225 0.66 +0.5
536,530 - CSW01_17225 0.67 -0.2
536,621 - CSW01_17225 0.72 -0.1
536,665 + CSW01_17225 0.74 -0.0
536,691 + CSW01_17225 0.76 +1.0
536,787 - CSW01_17225 0.81 +0.7
536,895 + CSW01_17225 0.87 -0.2
537,030 + -1.0
537,064 + +0.6
537,072 - -0.1
537,120 + -0.1
537,133 - +0.0
537,182 - CSW01_17230 0.11 -0.8
537,183 - CSW01_17230 0.11 +0.8
537,237 - CSW01_17230 0.15 +0.2
537,237 - CSW01_17230 0.15 +0.5
537,241 + CSW01_17230 0.16 +0.0
537,249 - CSW01_17230 0.16 +0.3
537,320 + CSW01_17230 0.22 -0.1
537,336 + CSW01_17230 0.24 -1.5
537,405 - CSW01_17230 0.29 +0.0
537,415 - CSW01_17230 0.30 -0.0
537,518 - CSW01_17230 0.39 +0.5
537,519 + CSW01_17230 0.39 +0.1
537,520 + CSW01_17230 0.39 -0.4
537,528 - CSW01_17230 0.39 -0.2
537,562 - CSW01_17230 0.42 -0.2
537,573 + CSW01_17230 0.43 +0.4
537,581 - CSW01_17230 0.44 +0.7
537,661 + CSW01_17230 0.50 -0.0
537,820 - CSW01_17230 0.63 +0.3
537,820 - CSW01_17230 0.63 +0.7

Or see this region's nucleotide sequence