Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17145

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17130 and CSW01_17135 overlap by 87 nucleotidesCSW01_17135 and CSW01_17140 are separated by 8 nucleotidesCSW01_17140 and CSW01_17145 are separated by 115 nucleotidesCSW01_17145 and CSW01_17150 are separated by 85 nucleotidesCSW01_17150 and CSW01_17155 are separated by 11 nucleotides CSW01_17130: CSW01_17130 - Zn-dependent protease, at 518,177 to 518,968 _17130 CSW01_17135: CSW01_17135 - hypothetical protein, at 518,882 to 519,071 _17135 CSW01_17140: CSW01_17140 - urease, at 519,080 to 519,562 _17140 CSW01_17145: CSW01_17145 - ABC transporter substrate-binding protein, at 519,678 to 520,463 _17145 CSW01_17150: CSW01_17150 - thiol:disulfide oxidoreductase, at 520,549 to 521,217 _17150 CSW01_17155: CSW01_17155 - glutathione S-transferase, at 521,229 to 521,840 _17155 Position (kb) 519 520 521Strain fitness (log2 ratio) -2 -1 0 1at 518.705 kb on + strand, within CSW01_17130at 518.705 kb on - strand, within CSW01_17130at 518.808 kb on + strand, within CSW01_17130at 518.816 kb on - strand, within CSW01_17130at 518.816 kb on - strand, within CSW01_17130at 518.856 kb on + strand, within CSW01_17130at 518.866 kb on + strand, within CSW01_17130at 518.866 kb on + strand, within CSW01_17130at 518.874 kb on - strand, within CSW01_17130at 518.889 kb on + strandat 518.897 kb on - strandat 518.897 kb on - strandat 518.925 kb on - strandat 518.999 kb on - strand, within CSW01_17135at 518.999 kb on - strand, within CSW01_17135at 519.014 kb on - strand, within CSW01_17135at 519.416 kb on + strand, within CSW01_17140at 519.476 kb on - strand, within CSW01_17140at 519.476 kb on - strand, within CSW01_17140at 519.499 kb on + strand, within CSW01_17140at 519.507 kb on - strand, within CSW01_17140at 519.507 kb on - strand, within CSW01_17140at 519.591 kb on + strandat 519.668 kb on - strandat 519.714 kb on + strandat 519.883 kb on - strand, within CSW01_17145at 520.371 kb on - strand, within CSW01_17145at 520.410 kb on - strandat 520.410 kb on - strandat 520.458 kb on + strandat 520.495 kb on + strandat 520.497 kb on + strandat 520.503 kb on - strandat 520.575 kb on + strandat 520.592 kb on + strandat 520.603 kb on + strandat 520.617 kb on + strand, within CSW01_17150at 520.618 kb on + strand, within CSW01_17150at 520.624 kb on + strand, within CSW01_17150at 520.625 kb on - strand, within CSW01_17150at 520.626 kb on - strand, within CSW01_17150at 520.632 kb on - strand, within CSW01_17150at 520.668 kb on + strand, within CSW01_17150at 520.669 kb on - strand, within CSW01_17150at 520.679 kb on - strand, within CSW01_17150at 520.724 kb on + strand, within CSW01_17150at 520.802 kb on + strand, within CSW01_17150at 520.885 kb on + strand, within CSW01_17150at 520.989 kb on + strand, within CSW01_17150at 521.024 kb on - strand, within CSW01_17150at 521.121 kb on + strand, within CSW01_17150at 521.150 kb on - strand, within CSW01_17150at 521.157 kb on + strandat 521.402 kb on + strand, within CSW01_17155at 521.434 kb on + strand, within CSW01_17155at 521.442 kb on + strand, within CSW01_17155

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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518,705 + CSW01_17130 0.67 +0.3
518,705 - CSW01_17130 0.67 +0.4
518,808 + CSW01_17130 0.80 +0.6
518,816 - CSW01_17130 0.81 -0.4
518,816 - CSW01_17130 0.81 +0.4
518,856 + CSW01_17130 0.86 -1.0
518,866 + CSW01_17130 0.87 -0.9
518,866 + CSW01_17130 0.87 +0.1
518,874 - CSW01_17130 0.88 +0.1
518,889 + -0.2
518,897 - +0.0
518,897 - -0.0
518,925 - -0.6
518,999 - CSW01_17135 0.62 +0.2
518,999 - CSW01_17135 0.62 -0.3
519,014 - CSW01_17135 0.69 -0.4
519,416 + CSW01_17140 0.70 +0.3
519,476 - CSW01_17140 0.82 +0.7
519,476 - CSW01_17140 0.82 -0.0
519,499 + CSW01_17140 0.87 +0.2
519,507 - CSW01_17140 0.88 +0.3
519,507 - CSW01_17140 0.88 +0.4
519,591 + +1.4
519,668 - -0.1
519,714 + -0.4
519,883 - CSW01_17145 0.26 -2.5
520,371 - CSW01_17145 0.88 -1.1
520,410 - +0.5
520,410 - +0.2
520,458 + -0.1
520,495 + -0.2
520,497 + -0.0
520,503 - -0.7
520,575 + +1.7
520,592 + -0.7
520,603 + -0.1
520,617 + CSW01_17150 0.10 +0.1
520,618 + CSW01_17150 0.10 -0.3
520,624 + CSW01_17150 0.11 +0.3
520,625 - CSW01_17150 0.11 -0.0
520,626 - CSW01_17150 0.12 -0.1
520,632 - CSW01_17150 0.12 +0.2
520,668 + CSW01_17150 0.18 +0.1
520,669 - CSW01_17150 0.18 +0.7
520,679 - CSW01_17150 0.19 -0.0
520,724 + CSW01_17150 0.26 -0.3
520,802 + CSW01_17150 0.38 +0.0
520,885 + CSW01_17150 0.50 +0.8
520,989 + CSW01_17150 0.66 +0.1
521,024 - CSW01_17150 0.71 -0.4
521,121 + CSW01_17150 0.86 -0.1
521,150 - CSW01_17150 0.90 +0.5
521,157 + -0.4
521,402 + CSW01_17155 0.28 +0.5
521,434 + CSW01_17155 0.33 +0.2
521,442 + CSW01_17155 0.35 -0.6

Or see this region's nucleotide sequence