Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16770 and CSW01_16775 are separated by 193 nucleotides CSW01_16775 and CSW01_16780 are separated by 183 nucleotides CSW01_16780 and CSW01_16785 are separated by 217 nucleotides CSW01_16785 and CSW01_16790 are separated by 67 nucleotides
CSW01_16770: CSW01_16770 - damage-inducible protein J, at 431,491 to 431,775
_16770
CSW01_16775: CSW01_16775 - N-acetyltransferase, at 431,969 to 432,484
_16775
CSW01_16780: CSW01_16780 - VOC family protein, at 432,668 to 433,081
_16780
CSW01_16785: CSW01_16785 - hypothetical protein, at 433,299 to 433,568
_16785
CSW01_16790: CSW01_16790 - IS3 family transposase, at 433,636 to 434,813
_16790
Position (kb) 432
433
434 Strain fitness (log2 ratio) -1
0
1 at 432.345 kb on + strand, within CSW01_16775 at 432.350 kb on + strand, within CSW01_16775 at 432.605 kb on - strand at 433.294 kb on + strand at 433.339 kb on - strand, within CSW01_16785 at 433.355 kb on + strand, within CSW01_16785 at 433.461 kb on - strand, within CSW01_16785 at 433.479 kb on + strand, within CSW01_16785 at 433.486 kb on - strand, within CSW01_16785 at 433.535 kb on - strand, within CSW01_16785
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 432,345 + CSW01_16775 0.73 +1.5 432,350 + CSW01_16775 0.74 -0.5 432,605 - -0.2 433,294 + -1.0 433,339 - CSW01_16785 0.15 -0.4 433,355 + CSW01_16785 0.21 -0.6 433,461 - CSW01_16785 0.60 -0.6 433,479 + CSW01_16785 0.67 -1.0 433,486 - CSW01_16785 0.69 +0.9 433,535 - CSW01_16785 0.87 -0.5
Or see this region's nucleotide sequence