Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16775

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16760 and CSW01_16765 are separated by 138 nucleotidesCSW01_16765 and CSW01_16770 overlap by 4 nucleotidesCSW01_16770 and CSW01_16775 are separated by 193 nucleotidesCSW01_16775 and CSW01_16780 are separated by 183 nucleotidesCSW01_16780 and CSW01_16785 are separated by 217 nucleotides CSW01_16760: CSW01_16760 - hypothetical protein, at 430,682 to 431,077 _16760 CSW01_16765: CSW01_16765 - type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family, at 431,216 to 431,494 _16765 CSW01_16770: CSW01_16770 - damage-inducible protein J, at 431,491 to 431,775 _16770 CSW01_16775: CSW01_16775 - N-acetyltransferase, at 431,969 to 432,484 _16775 CSW01_16780: CSW01_16780 - VOC family protein, at 432,668 to 433,081 _16780 CSW01_16785: CSW01_16785 - hypothetical protein, at 433,299 to 433,568 _16785 Position (kb) 431 432 433Strain fitness (log2 ratio) -1 0 1at 432.345 kb on + strand, within CSW01_16775at 432.350 kb on + strand, within CSW01_16775at 432.605 kb on - strandat 433.294 kb on + strandat 433.339 kb on - strand, within CSW01_16785at 433.355 kb on + strand, within CSW01_16785at 433.461 kb on - strand, within CSW01_16785at 433.479 kb on + strand, within CSW01_16785

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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432,345 + CSW01_16775 0.73 +1.5
432,350 + CSW01_16775 0.74 -0.5
432,605 - -0.2
433,294 + -1.0
433,339 - CSW01_16785 0.15 -0.4
433,355 + CSW01_16785 0.21 -0.6
433,461 - CSW01_16785 0.60 -0.6
433,479 + CSW01_16785 0.67 -1.0

Or see this region's nucleotide sequence