Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16610

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16595 and CSW01_16600 are separated by 2 nucleotidesCSW01_16600 and CSW01_16605 are separated by 74 nucleotidesCSW01_16605 and CSW01_16610 are separated by 192 nucleotidesCSW01_16610 and CSW01_16615 overlap by 14 nucleotidesCSW01_16615 and CSW01_16620 are separated by 127 nucleotidesCSW01_16620 and CSW01_16625 are separated by 56 nucleotides CSW01_16595: CSW01_16595 - type II toxin-antitoxin system death-on-curing family toxin, at 416,965 to 417,366 _16595 CSW01_16600: CSW01_16600 - DUF3265 domain-containing protein, at 417,369 to 417,479 _16600 CSW01_16605: CSW01_16605 - VOC family protein, at 417,554 to 417,967 _16605 CSW01_16610: CSW01_16610 - prevent-host-death family protein, at 418,160 to 418,432 _16610 CSW01_16615: CSW01_16615 - type II toxin-antitoxin system RelE/ParE family toxin, at 418,419 to 418,709 _16615 CSW01_16620: CSW01_16620 - N-acetyltransferase, at 418,837 to 419,292 _16620 CSW01_16625: CSW01_16625 - acetyltransferase, at 419,349 to 419,471 _16625 Position (kb) 418 419Strain fitness (log2 ratio) -2 -1 0 1at 417.196 kb on + strand, within CSW01_16595at 417.196 kb on + strand, within CSW01_16595at 417.204 kb on - strand, within CSW01_16595at 417.204 kb on - strand, within CSW01_16595at 417.204 kb on - strand, within CSW01_16595at 417.282 kb on - strand, within CSW01_16595at 417.417 kb on + strand, within CSW01_16600at 417.481 kb on - strandat 418.264 kb on - strand, within CSW01_16610at 418.609 kb on - strand, within CSW01_16615

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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417,196 + CSW01_16595 0.57 +0.3
417,196 + CSW01_16595 0.57 -1.0
417,204 - CSW01_16595 0.59 -0.1
417,204 - CSW01_16595 0.59 -0.2
417,204 - CSW01_16595 0.59 +0.1
417,282 - CSW01_16595 0.79 +0.0
417,417 + CSW01_16600 0.43 +0.3
417,481 - -0.2
418,264 - CSW01_16610 0.38 -2.1
418,609 - CSW01_16615 0.65 -0.8

Or see this region's nucleotide sequence