Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16570 and CSW01_16575 are separated by 11 nucleotides CSW01_16575 and CSW01_16580 are separated by 280 nucleotides CSW01_16580 and CSW01_16585 are separated by 22 nucleotides CSW01_16585 and CSW01_16590 are separated by 170 nucleotides
CSW01_16570: CSW01_16570 - N-acetyltransferase, at 413,900 to 414,334
_16570
CSW01_16575: CSW01_16575 - acetyltransferase, at 414,346 to 414,501
_16575
CSW01_16580: CSW01_16580 - IS5 family transposase ISVch5, at 414,782 to 415,762
_16580
CSW01_16585: CSW01_16585 - acetyltransferase, at 415,785 to 416,102
_16585
CSW01_16590: CSW01_16590 - N-acetyltransferase, at 416,273 to 416,965
_16590
Position (kb) 414
415
416 Strain fitness (log2 ratio) -1
0
1 at 414.040 kb on - strand, within CSW01_16570 at 414.077 kb on + strand, within CSW01_16570 at 414.077 kb on + strand, within CSW01_16570 at 414.077 kb on + strand, within CSW01_16570 at 414.100 kb on - strand, within CSW01_16570 at 414.129 kb on + strand, within CSW01_16570 at 414.319 kb on - strand at 414.321 kb on + strand at 414.329 kb on + strand at 414.362 kb on - strand, within CSW01_16575 at 414.364 kb on - strand, within CSW01_16575 at 415.870 kb on - strand, within CSW01_16585 at 415.880 kb on - strand, within CSW01_16585 at 416.759 kb on + strand, within CSW01_16590
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 414,040 - CSW01_16570 0.32 -0.1 414,077 + CSW01_16570 0.41 -0.7 414,077 + CSW01_16570 0.41 -0.0 414,077 + CSW01_16570 0.41 +0.3 414,100 - CSW01_16570 0.46 +0.5 414,129 + CSW01_16570 0.53 +0.9 414,319 - +0.3 414,321 + -1.3 414,329 + +0.0 414,362 - CSW01_16575 0.10 -0.8 414,364 - CSW01_16575 0.12 +0.0 415,870 - CSW01_16585 0.27 +0.0 415,880 - CSW01_16585 0.30 -1.3 416,759 + CSW01_16590 0.70 -0.1
Or see this region's nucleotide sequence