Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16500 and CSW01_16505 overlap by 49 nucleotides CSW01_16505 and CSW01_16510 are separated by 196 nucleotides CSW01_16510 and CSW01_16515 are separated by 90 nucleotides CSW01_16515 and CSW01_16520 are separated by 143 nucleotides CSW01_16520 and CSW01_16525 are separated by 119 nucleotides CSW01_16525 and CSW01_16530 overlap by 25 nucleotides
CSW01_16500: CSW01_16500 - general secretion pathway protein GspH, at 410,080 to 410,223
_16500
CSW01_16505: CSW01_16505 - DUF645 domain-containing protein, at 410,175 to 410,346
_16505
CSW01_16510: CSW01_16510 - VOC family virulence protein, at 410,543 to 410,941
_16510
CSW01_16515: CSW01_16515 - pullulanase, at 411,032 to 411,385
_16515
CSW01_16520: CSW01_16520 - hypothetical protein, at 411,529 to 411,933
_16520
CSW01_16525: CSW01_16525 - DUF1289 domain-containing protein, at 412,053 to 412,334
_16525
CSW01_16530: CSW01_16530 - DUF1196 domain-containing protein, at 412,310 to 412,468
_16530
CSW01_16535: CSW01_16535 - transcriptional regulator, at 412,385 to 412,522
_16535
Position (kb) 411
412 Strain fitness (log2 ratio) -1
0
1 at 410.255 kb on + strand, within CSW01_16505 at 410.275 kb on - strand, within CSW01_16505 at 410.275 kb on - strand, within CSW01_16505 at 410.305 kb on - strand, within CSW01_16505 at 410.421 kb on - strand at 410.421 kb on - strand
Per-strain Table
Or see this region's nucleotide sequence