Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16210 and CSW01_16215 are separated by 182 nucleotides CSW01_16215 and CSW01_16220 are separated by 280 nucleotides CSW01_16220 and CSW01_16225 are separated by 138 nucleotides CSW01_16225 and CSW01_16230 are separated by 304 nucleotides CSW01_16230 and CSW01_16235 are separated by 41 nucleotides
CSW01_16210: CSW01_16210 - VOC family protein, at 380,967 to 381,326
_16210
CSW01_16215: CSW01_16215 - DUF3709 domain-containing protein, at 381,509 to 381,832
_16215
CSW01_16220: CSW01_16220 - N-acetyltransferase, at 382,113 to 382,649
_16220
CSW01_16225: CSW01_16225 - hypothetical protein, at 382,788 to 383,105
_16225
CSW01_16230: CSW01_16230 - DUF645 domain-containing protein, at 383,410 to 383,592
_16230
CSW01_16235: CSW01_16235 - hypothetical protein, at 383,634 to 383,729
_16235
Position (kb) 382
383 Strain fitness (log2 ratio) -1
0
1 at 381.470 kb on + strand at 381.612 kb on + strand, within CSW01_16215 at 381.713 kb on - strand, within CSW01_16215 at 382.793 kb on - strand at 382.928 kb on + strand, within CSW01_16225 at 383.465 kb on - strand, within CSW01_16230 at 383.492 kb on + strand, within CSW01_16230 at 383.500 kb on - strand, within CSW01_16230 at 383.506 kb on + strand, within CSW01_16230 at 383.551 kb on - strand, within CSW01_16230
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 381,470 + -0.2 381,612 + CSW01_16215 0.32 -1.7 381,713 - CSW01_16215 0.63 +0.2 382,793 - -0.4 382,928 + CSW01_16225 0.44 +0.5 383,465 - CSW01_16230 0.30 +0.2 383,492 + CSW01_16230 0.45 -0.8 383,500 - CSW01_16230 0.49 +0.3 383,506 + CSW01_16230 0.52 -0.1 383,551 - CSW01_16230 0.77 -0.3
Or see this region's nucleotide sequence