Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15970 and CSW01_15975 are separated by 143 nucleotides CSW01_15975 and CSW01_15980 are separated by 296 nucleotides CSW01_15980 and CSW01_15985 are separated by 195 nucleotides CSW01_15985 and CSW01_15990 are separated by 148 nucleotides
CSW01_15970: CSW01_15970 - hypothetical protein, at 359,779 to 360,174
_15970
CSW01_15975: CSW01_15975 - nitrate reductase, at 360,318 to 360,854
_15975
CSW01_15980: CSW01_15980 - DUF645 domain-containing protein, at 361,151 to 361,330
_15980
CSW01_15985: CSW01_15985 - GNAT family N-acetyltransferase, at 361,526 to 361,951
_15985
CSW01_15990: CSW01_15990 - hypothetical protein, at 362,100 to 362,447
_15990
Position (kb) 361
362 Strain fitness (log2 ratio) -1
0
1 at 360.367 kb on - strand at 360.376 kb on + strand, within CSW01_15975 at 360.384 kb on - strand, within CSW01_15975 at 360.401 kb on + strand, within CSW01_15975 at 360.443 kb on - strand, within CSW01_15975 at 360.457 kb on + strand, within CSW01_15975 at 360.457 kb on + strand, within CSW01_15975 at 360.457 kb on + strand, within CSW01_15975 at 360.465 kb on - strand, within CSW01_15975 at 360.465 kb on - strand, within CSW01_15975 at 360.844 kb on - strand at 362.109 kb on + strand at 362.203 kb on - strand, within CSW01_15990
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 360,367 - -0.5 360,376 + CSW01_15975 0.11 +0.8 360,384 - CSW01_15975 0.12 +0.5 360,401 + CSW01_15975 0.15 +0.3 360,443 - CSW01_15975 0.23 -0.3 360,457 + CSW01_15975 0.26 -0.1 360,457 + CSW01_15975 0.26 +0.4 360,457 + CSW01_15975 0.26 -0.9 360,465 - CSW01_15975 0.27 -1.4 360,465 - CSW01_15975 0.27 +0.6 360,844 - -1.3 362,109 + +0.2 362,203 - CSW01_15990 0.30 -0.3
Or see this region's nucleotide sequence