Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15800

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15785 and CSW01_15790 are separated by 74 nucleotidesCSW01_15790 and CSW01_15795 are separated by 150 nucleotidesCSW01_15795 and CSW01_15800 overlap by 4 nucleotidesCSW01_15800 and CSW01_15805 are separated by 194 nucleotidesCSW01_15805 and CSW01_15810 are separated by 64 nucleotides CSW01_15785: CSW01_15785 - DUF3265 domain-containing protein, at 340,668 to 340,784 _15785 CSW01_15790: CSW01_15790 - VOC family protein, at 340,859 to 341,272 _15790 CSW01_15795: CSW01_15795 - type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family, at 341,423 to 341,701 _15795 CSW01_15800: CSW01_15800 - damage-inducible protein J, at 341,698 to 341,982 _15800 CSW01_15805: CSW01_15805 - lipocalin, at 342,177 to 342,692 _15805 CSW01_15810: CSW01_15810 - hypothetical protein, at 342,757 to 343,353 _15810 Position (kb) 341 342Strain fitness (log2 ratio) -1 0 1at 340.774 kb on - strandat 342.813 kb on + strandat 342.876 kb on - strand, within CSW01_15810

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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340,774 - +0.1
342,813 + +0.2
342,876 - CSW01_15810 0.20 +0.6

Or see this region's nucleotide sequence