Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15795

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_15780 and CSW01_15785 overlap by 4 nucleotidesCSW01_15785 and CSW01_15790 are separated by 74 nucleotidesCSW01_15790 and CSW01_15795 are separated by 150 nucleotidesCSW01_15795 and CSW01_15800 overlap by 4 nucleotidesCSW01_15800 and CSW01_15805 are separated by 194 nucleotides CSW01_15780: CSW01_15780 - hypothetical protein, at 340,192 to 340,671 _15780 CSW01_15785: CSW01_15785 - DUF3265 domain-containing protein, at 340,668 to 340,784 _15785 CSW01_15790: CSW01_15790 - VOC family protein, at 340,859 to 341,272 _15790 CSW01_15795: CSW01_15795 - type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family, at 341,423 to 341,701 _15795 CSW01_15800: CSW01_15800 - damage-inducible protein J, at 341,698 to 341,982 _15800 CSW01_15805: CSW01_15805 - lipocalin, at 342,177 to 342,692 _15805 Position (kb) 341 342Strain fitness (log2 ratio) -1 0 1at 340.463 kb on - strand, within CSW01_15780at 340.532 kb on - strand, within CSW01_15780at 340.624 kb on + strandat 340.774 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
340,463 - CSW01_15780 0.56 -0.4
340,532 - CSW01_15780 0.71 -0.1
340,624 + -0.5
340,774 - +0.1

Or see this region's nucleotide sequence