Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15785

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15775 and CSW01_15780 are separated by 212 nucleotidesCSW01_15780 and CSW01_15785 overlap by 4 nucleotidesCSW01_15785 and CSW01_15790 are separated by 74 nucleotidesCSW01_15790 and CSW01_15795 are separated by 150 nucleotidesCSW01_15795 and CSW01_15800 overlap by 4 nucleotides CSW01_15775: CSW01_15775 - DUF1349 domain-containing protein, at 339,350 to 339,979 _15775 CSW01_15780: CSW01_15780 - hypothetical protein, at 340,192 to 340,671 _15780 CSW01_15785: CSW01_15785 - DUF3265 domain-containing protein, at 340,668 to 340,784 _15785 CSW01_15790: CSW01_15790 - VOC family protein, at 340,859 to 341,272 _15790 CSW01_15795: CSW01_15795 - type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family, at 341,423 to 341,701 _15795 CSW01_15800: CSW01_15800 - damage-inducible protein J, at 341,698 to 341,982 _15800 Position (kb) 340 341Strain fitness (log2 ratio) -2 -1 0 1at 339.699 kb on - strand, within CSW01_15775at 339.804 kb on - strand, within CSW01_15775at 339.844 kb on + strand, within CSW01_15775at 339.885 kb on + strand, within CSW01_15775at 339.885 kb on + strand, within CSW01_15775at 339.893 kb on - strand, within CSW01_15775at 339.893 kb on - strand, within CSW01_15775at 339.901 kb on + strand, within CSW01_15775at 340.010 kb on - strandat 340.183 kb on + strandat 340.185 kb on - strandat 340.351 kb on - strand, within CSW01_15780at 340.390 kb on + strand, within CSW01_15780at 340.463 kb on - strand, within CSW01_15780at 340.532 kb on - strand, within CSW01_15780at 340.624 kb on + strandat 340.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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339,699 - CSW01_15775 0.55 +0.6
339,804 - CSW01_15775 0.72 -0.2
339,844 + CSW01_15775 0.78 +0.1
339,885 + CSW01_15775 0.85 -0.4
339,885 + CSW01_15775 0.85 -0.2
339,893 - CSW01_15775 0.86 +0.3
339,893 - CSW01_15775 0.86 -0.6
339,901 + CSW01_15775 0.87 +1.5
340,010 - -0.4
340,183 + -2.1
340,185 - -0.1
340,351 - CSW01_15780 0.33 -0.1
340,390 + CSW01_15780 0.41 +0.4
340,463 - CSW01_15780 0.56 -0.4
340,532 - CSW01_15780 0.71 -0.1
340,624 + -0.5
340,774 - +0.1

Or see this region's nucleotide sequence