Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15630 and CSW01_15635 overlap by 28 nucleotides CSW01_15635 and CSW01_15640 overlap by 20 nucleotides CSW01_15640 and CSW01_15645 are separated by 206 nucleotides CSW01_15645 and CSW01_15650 are separated by 272 nucleotides CSW01_15650 and CSW01_15655 are separated by 43 nucleotides CSW01_15655 and CSW01_15660 overlap by 35 nucleotides CSW01_15660 and CSW01_15665 are separated by 3 nucleotides CSW01_15665 and CSW01_15670 are separated by 51 nucleotides
CSW01_15630: CSW01_15630 - TIGR03643 family protein, at 328,632 to 328,883
_15630
CSW01_15635: CSW01_15635 - DUF3265 domain-containing protein, at 328,856 to 329,005
_15635
CSW01_15640: CSW01_15640 - pullulanase, at 328,986 to 329,339
_15640
CSW01_15645: CSW01_15645 - DUF3709 domain-containing protein, at 329,546 to 329,869
_15645
CSW01_15650: CSW01_15650 - positive regulator AgmR, at 330,142 to 330,264
_15650
CSW01_15655: CSW01_15655 - ggdef family protein, at 330,308 to 330,422
_15655
CSW01_15660: CSW01_15660 - cell shape-determining protein MreC, at 330,388 to 330,519
_15660
CSW01_15665: CSW01_15665 - hypothetical protein, at 330,523 to 330,618
_15665
CSW01_15670: CSW01_15670 - peroxiredoxin, at 330,670 to 331,158
_15670
Position (kb) 329
330 Strain fitness (log2 ratio) -1
0
1 at 328.986 kb on + strand at 328.988 kb on + strand at 328.998 kb on + strand at 328.998 kb on + strand at 328.998 kb on + strand at 328.998 kb on + strand at 328.998 kb on + strand at 328.998 kb on + strand at 328.998 kb on + strand at 329.840 kb on + strand at 330.308 kb on + strand at 330.318 kb on - strand at 330.400 kb on + strand at 330.400 kb on + strand at 330.408 kb on - strand at 330.425 kb on + strand, within CSW01_15660 at 330.438 kb on - strand, within CSW01_15660 at 330.641 kb on + strand at 330.769 kb on - strand, within CSW01_15670 at 330.769 kb on - strand, within CSW01_15670 at 330.769 kb on - strand, within CSW01_15670 at 330.769 kb on - strand, within CSW01_15670 at 330.825 kb on - strand, within CSW01_15670
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 328,986 + -0.5 328,988 + -0.1 328,998 + +0.8 328,998 + -0.1 328,998 + -0.2 328,998 + -0.2 328,998 + +0.1 328,998 + +0.4 328,998 + -0.0 329,840 + -1.2 330,308 + +0.1 330,318 - +0.2 330,400 + -1.0 330,400 + -0.3 330,408 - -1.1 330,425 + CSW01_15660 0.28 +0.4 330,438 - CSW01_15660 0.38 -0.5 330,641 + +0.1 330,769 - CSW01_15670 0.20 -0.7 330,769 - CSW01_15670 0.20 -0.2 330,769 - CSW01_15670 0.20 -0.1 330,769 - CSW01_15670 0.20 +0.7 330,825 - CSW01_15670 0.32 +0.1
Or see this region's nucleotide sequence