Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15640

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15625 and CSW01_15630 are separated by 194 nucleotidesCSW01_15630 and CSW01_15635 overlap by 28 nucleotidesCSW01_15635 and CSW01_15640 overlap by 20 nucleotidesCSW01_15640 and CSW01_15645 are separated by 206 nucleotidesCSW01_15645 and CSW01_15650 are separated by 272 nucleotidesCSW01_15650 and CSW01_15655 are separated by 43 nucleotides CSW01_15625: CSW01_15625 - VOC family virulence protein, at 328,039 to 328,437 _15625 CSW01_15630: CSW01_15630 - TIGR03643 family protein, at 328,632 to 328,883 _15630 CSW01_15635: CSW01_15635 - DUF3265 domain-containing protein, at 328,856 to 329,005 _15635 CSW01_15640: CSW01_15640 - pullulanase, at 328,986 to 329,339 _15640 CSW01_15645: CSW01_15645 - DUF3709 domain-containing protein, at 329,546 to 329,869 _15645 CSW01_15650: CSW01_15650 - positive regulator AgmR, at 330,142 to 330,264 _15650 CSW01_15655: CSW01_15655 - ggdef family protein, at 330,308 to 330,422 _15655 Position (kb) 328 329 330Strain fitness (log2 ratio) -1 0 1at 328.986 kb on + strandat 328.988 kb on + strandat 328.998 kb on + strandat 328.998 kb on + strandat 328.998 kb on + strandat 328.998 kb on + strandat 328.998 kb on + strandat 328.998 kb on + strandat 328.998 kb on + strandat 329.840 kb on + strandat 330.308 kb on + strandat 330.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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328,986 + -0.5
328,988 + -0.1
328,998 + +0.8
328,998 + -0.1
328,998 + -0.2
328,998 + -0.2
328,998 + +0.1
328,998 + +0.4
328,998 + -0.0
329,840 + -1.2
330,308 + +0.1
330,318 - +0.2

Or see this region's nucleotide sequence